SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G45880 | AT | Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:16869855-16871544 REVERSE LENGTH=345 | SoyBase | E_val: 3.00E-95 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0008654 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phospholipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| PTHR12461 | Panther | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED | JGI | ISS | |
| PTHR12461:SF2 | Panther | PLA2G4B | JGI | ISS | |
| UniRef100_G7K2Q1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: JmjC domain-containing protein n=1 Tax=Medicago truncatula RepID=G7K2Q1_MEDTR | SoyBase | E_val: 2.00E-113 | ISS |
| UniRef100_I1LIF0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LIF0_SOYBN | SoyBase | E_val: 7.00E-161 | ISS |
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Glyma11g09500 not represented in the dataset |
Glyma11g09500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g09500.3 sequence type=CDS gene model=Glyma11g09500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGAGGAGAATGGGATAGAGGAACTGTGGAGGGAAGTGAGGGATTTGAGTTTGGGAAACGGCGGAAGAGTAGAGAGACTAGAGTCTCCACCAACCCCAGTTCAGTTCCTGAGAGACTTCATCACACCAAACAAGCCATGCATAATCTCCAACGCCATTACGCACTGGCCCGCACTCTCTTCCTGGACCAACCCTTCCCACCTCTCCCAATCCCTCTCCGGCGCCACCGTCTCCGTCCACCTCACCCCCACCGGCGCCGCCGACGCCCTCGCCCCTCTCCGCTCCTCCCTCTGCTTCGCCTCCGCGCACGTGCAGCGCGTGCCCTTCCCCCACGCCCTTGACCTCATCTCCTTTTCCGAGCCTTCCAAGCTAGTCGCTTACGCGCAGCAACAAAATGATTGCTTTCGCTCTGAATATTCGTCTCTTGCTGATGACTGTGACCCTCACTTTGGTTGGGCCACCGAAGCTATTGGCTCCGAACCCGAAGCTGTGAACCTCTGGATCGGTAATCAGCATTCCCGAACCTCCTTCCATAAGGATCACTACGAGAATCTCTACGCTGTTGTCACTGGAGAAAAACACTTCCTGTTGTTGCCACCTACTGATGTTCATCGCTTGTATATTCGTGACTACCCTGCTGCCACTTACTCATATTCTTCGCCAACCATATTTGATGAATTCAAGCGAATGATAATACCAAAAGTAAAGGGTACTTGA
>Glyma11g09500.3 sequence type=predicted peptide gene model=Glyma11g09500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKEENGIEELWREVRDLSLGNGGRVERLESPPTPVQFLRDFITPNKPCIISNAITHWPALSSWTNPSHLSQSLSGATVSVHLTPTGAADALAPLRSSLCFASAHVQRVPFPHALDLISFSEPSKLVAYAQQQNDCFRSEYSSLADDCDPHFGWATEAIGSEPEAVNLWIGNQHSRTSFHKDHYENLYAVVTGEKHFLLLPPTDVHRLYIRDYPAATYSYSSPTIFDEFKRMIIPKVKGT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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