SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G51520 | AT | Annotation by Michelle Graham. TAIR10: diacylglycerol acyltransferase family | chr3:19110739-19112518 FORWARD LENGTH=314 | SoyBase | E_val: 1.00E-123 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004144 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: diacylglycerol O-acyltransferase activity | SoyBase | N/A | ISS |
| GO:0016747 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups | SoyBase | N/A | ISS |
| KOG0831 | KOG | Acyl-CoA:diacylglycerol acyltransferase (DGAT) | JGI | ISS | |
| PTHR12317 | Panther | DIACYLGLYCEROL O-ACYLTRANSFERASE | JGI | ISS | |
| PF03982 | PFAM | Diacylglycerol acyltransferase | JGI | ISS | |
| UniRef100_G7K2N1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Diacylglycerol O-acyltransferase n=1 Tax=Medicago truncatula RepID=G7K2N1_MEDTR | SoyBase | E_val: 2.00E-150 | ISS |
| UniRef100_UPI000233D597 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D597 related cluster n=1 Tax=unknown RepID=UPI000233D597 | SoyBase | E_val: 5.00E-178 | ISS |
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Glyma11g09411 not represented in the dataset |
Glyma11g09411 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g36011 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g088800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g09411.1 sequence type=CDS gene model=Glyma11g09411 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAATGGCGCTGTGGCTGTATTCACTTCAACATCGCCCTGGTCCTCTTCGCCGTGTTTTTCCTTCCTCTCTCCAAATCGATCTTGGTTTTCGGTTTTCTCTTTGTCTTTATGGTGCTTCCTATCAACCAAAAAAGTAGATTCGGCCGAAATTTGTCGAGGTTCATATGCAAGCACGCCTGCAATTACTTTCCCATCACACTTCACGTAGAGGATATGAAAGCCTTTGATCCTAATCGTGCTTATGTTTTTGGGTATGAACCACATTCAGTTTTGCCAATTGGCATTGTTGCACTGGCTGAACACACAGGTTTCATGCCTCTTCCAAAAGTTAAAGTGTTCTACACACCGTTTTTGAGACACACATGGACATGGTTGGGTCTTACACCGGCAACAAAGAAAATTTTTATCTCCCTGTTAGCATCTGGTCATAGTTGCATTTTAATACCTGGTGGAGTGCAAGAAGCATTTCTCATGCAGCGTGGCACTGAGATTGCTTTCCTTAAGGCAAGAAGAGGATTTGTCCGCATAACAATGGTGAAAGGCCGACCTTTGGTTCCAGTTTTCTGCTTTGGCCAGTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTCTTTCTGAAATTTGCAAGGGCTATCCCTGGTGCAGCGGTAAAGTCTCCATTACCGTTCAGACATCCTATGCATGTGGTTGTGGGTAGACCAATTGAGCTTGACAAAAAACCAGAACCAACCACCGAGGAGGTTGCCAAGATACATAGTCAGTTTGTGGAAGCACTTCAAGATCTCTTCGAGAGGCTATCCAAACCTTGA
>Glyma11g09411.1 sequence type=predicted peptide gene model=Glyma11g09411 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high QWRCGCIHFNIALVLFAVFFLPLSKSILVFGFLFVFMVLPINQKSRFGRNLSRFICKHACNYFPITLHVEDMKAFDPNRAYVFGYEPHSVLPIGIVALAEHTGFMPLPKVKVFYTPFLRHTWTWLGLTPATKKIFISLLASGHSCILIPGGVQEAFLMQRGTEIAFLKARRGFVRITMVKGRPLVPVFCFGQSNVYKWWKPGGKFFLKFARAIPGAAVKSPLPFRHPMHVVVGRPIELDKKPEPTTEEVAKIHSQFVEALQDLFERLSKP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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