Glyma11g09400 - SoyBase

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Report for Sequence Feature Glyma11g09400

Feature Type:	gene_model
Chromosome:	Gm11
Start:	6691396
stop:	6696337
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g09400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38180	AT	Annotation by Michelle Graham. TAIR10: FAR1-related sequence 5 \| chr4:17906702-17909404 REVERSE LENGTH=788	SoyBase	E_val: 0	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF03101	PFAM	FAR1 DNA-binding domain	JGI		ISS
PF04434	PFAM	SWIM zinc finger	JGI		ISS
PF10551	PFAM	MULE transposase domain	JGI		ISS
UniRef100_I1LIE2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LIE2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SZL8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein FAR1-RELATED SEQUENCE 5 n=2 Tax=Arabidopsis thaliana RepID=FRS5_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g09400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g09400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g088700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g09400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g09400

Limit To All Plant Sequences

>Glyma11g09400.1   sequence type=CDS   gene model=Glyma11g09400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTGAGCCTTTGAGTCTAAGCGACGAGGTTATTGAATTTGATATGATTGGTTTGGGGGATGATGCTGCCATTGACACGGAGCACCCTGTCGAGGATGATGAGGACCTTGTTAATATTGATAATAGTCCTGCTACTGCTTTTACTGTTCTAGCTGCTGGTTTGGGACCTCACATTGCTGGAGGGGACACTAATCTTGAACCTTGTCAAGGTATGGAATTTGAATCCGAAGAGGCTGCAAAGGCCTTTTATAACTCCTATGCTCGCCGTGTTGGCTTTAGTACGCGGGTGAGCATGTCACGACGCTCCAGGCGTGATGGTTCTATAATTCAGAGGTCTTTTGTGTGTGCCAAGGAAGGTTTTCGTGTGGAGAGGGAGAAGCATTTGGTTGATGGCAGAGTCAAGCGGCCTCGTGCTGAAACCCGTGTTGGTTGCAAGGCCATGTTGGTTGTGAAAATCCAAGATTCTGGTAGATGGGTTGTTTCTTCTTTTCTCAAGGAACATAACCATGAATTGGTTCCGCCTGACAAGGTGCATTGCCTTCGTTCGCACCGCCATGTTTCAGGTCCAGCTAAGTCGTTGATTGATACTTTACAGGGTGCCGGAATAGGCCCTAGTGGAATAATGTCTGCACTAATAAAAGAATATGGAGCTATTAGCAATATCGGTTTCACTGAGCGTGACTGTAGGAATTATATGAGAAGCAGTAGGCAAAGGACCCTTGGAGGTGACACTCAAATCCTTTTGGATTACTTGAAGAGCAAACAAGCAGAGAATCCTTCATTTTTCTATGCTGTACAACTACAAGGTGATGAAGATCATTGCATGAGTAATATCTTCTGGGTTGATTCCAAGGCCAGGACTAACTACACTTACTTTGGTGACACTGTCACCTTTGACACAGCATATAGGTCAAACCGCTATAGATTGCCTTTCGCACCTTTCACTGGTGTAAATCATCATGGACAGCCTGTACTATTTGGTTGTGCTCTCCTGATAAATGAATCTGAGGCCTCTTTTGTTTGGCTGTTCAAAACCTGGCTTGAAGCAATGACAGGCCAACCTCCAGTTTCAATTACTACTGATCATGATAGGGTGATTCGTGCAGCCATCAACAATGTCTTTCCTGGTACCCGTCACCGATTTTGTAAGTGGCACGTTTTTAAAGAGTGCCAAGAGATGTTATCACATGTGCTTTCTGAACATCTTAATTTTGAAGCTGACCTCCACAAATGTGTTAATCTGACGGAGTCCATTGAGGAGTTTGAGTCTTGTTGGTCCTCCCTAATTGATAGGTATGATCTCAAAGAACACGAATGGCTAAAAGCAATTTATGGTGATAGGCGGCAGTGGGTACCAGTGTACTTGAGGGACACATTTTTTGCTGAAATGTCAATAACACAGCGAAGTGATAGCATAAACTCTTATTTCGATGGATATATCAATGCATCAACAACACTTCAGCTTTTTGTCAAGCAGTATGAGAAAGCTCTGGAGAGCCGTTATGAAAAAGAAGTCAAAGCTGATTATGACACAATTAACACTACTCCAGTTCTGAAGACTCCATCACCTCTAGAGAAACAGGCAGCTGAAGTTTACACAAGAAGATTGTTTATCAAATTTCAAGAAGAGTTGGTTGAGACATTAACATTCTTGGCAAACAAAGTAGATGAGAAAGAAATAATTACTGTGTATAGAGTAGCCAAATATGGGGAAATGCACAGGGCCTACTTTGTCAGATTTAACTCTTTTGAGATGAAAGCTACTTGTACCTGCCAGATGTTTGAGTTTTCTGGTCTAGTTTGTAGACATATATTGACTGTCTTTAGGGTTATAAATCTTCTTACTTTACCATCTCATTATATTTTAAAAAGATGGAGCAGGATAGCTAAAAGTGGGGCCATATTGGATGAACGTACTACTAATTTGTCAACTCGTGCCCAAGAATCCCTAACTATCCGATACAATAACCTTCGTCACAAGGCCCTTAAGTATGCTGATGAGGGAATAAACTCTCCAAAAGTTTATGATGTGGCATTGAGTGCACTTCTGGAAGCTGCGAGTAAAGTGGCACTTGCAACAAAAAATGGTGGAAGGCAGACTATTTTAAATGGAACATGTGAAGAAGACCTTCATCAGAGCAATGAAGCAACTACAAGTTGCAGCGATTCTCCTATTGGTTCACAACAATCTTCATACAAGGATGACCAAGATAGAACAATTGAGAAGTTGACACGGCAACTTGACCGAGCTCGAAGGAAGTGTGAAGTCTATAGGTCCAACTTGCTGTCGGTTTTAAAAGATATTGAAGAGCAGAAGCTACAATTATCAGTTAAAGTCCAAAATATTAAGTTAGAAATGAAAGATTGA

Predicted protein sequences of Glyma11g09400

Limit To All Plant Sequences

>Glyma11g09400.1   sequence type=predicted peptide   gene model=Glyma11g09400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFEPLSLSDEVIEFDMIGLGDDAAIDTEHPVEDDEDLVNIDNSPATAFTVLAAGLGPHIAGGDTNLEPCQGMEFESEEAAKAFYNSYARRVGFSTRVSMSRRSRRDGSIIQRSFVCAKEGFRVEREKHLVDGRVKRPRAETRVGCKAMLVVKIQDSGRWVVSSFLKEHNHELVPPDKVHCLRSHRHVSGPAKSLIDTLQGAGIGPSGIMSALIKEYGAISNIGFTERDCRNYMRSSRQRTLGGDTQILLDYLKSKQAENPSFFYAVQLQGDEDHCMSNIFWVDSKARTNYTYFGDTVTFDTAYRSNRYRLPFAPFTGVNHHGQPVLFGCALLINESEASFVWLFKTWLEAMTGQPPVSITTDHDRVIRAAINNVFPGTRHRFCKWHVFKECQEMLSHVLSEHLNFEADLHKCVNLTESIEEFESCWSSLIDRYDLKEHEWLKAIYGDRRQWVPVYLRDTFFAEMSITQRSDSINSYFDGYINASTTLQLFVKQYEKALESRYEKEVKADYDTINTTPVLKTPSPLEKQAAEVYTRRLFIKFQEELVETLTFLANKVDEKEIITVYRVAKYGEMHRAYFVRFNSFEMKATCTCQMFEFSGLVCRHILTVFRVINLLTLPSHYILKRWSRIAKSGAILDERTTNLSTRAQESLTIRYNNLRHKALKYADEGINSPKVYDVALSALLEAASKVALATKNGGRQTILNGTCEEDLHQSNEATTSCSDSPIGSQQSSYKDDQDRTIEKLTRQLDRARRKCEVYRSNLLSVLKDIEEQKLQLSVKVQNIKLEMKD*

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