Glyma11g09310 - SoyBase

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Report for Sequence Feature Glyma11g09310

Feature Type:	gene_model
Chromosome:	Gm11
Start:	6612484
stop:	6615654
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g09310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35470	AT	Annotation by Michelle Graham. TAIR10: plant intracellular ras group-related LRR 4 \| chr4:16846531-16848448 FORWARD LENGTH=549	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
KOG0617	KOG	Ras suppressor protein (contains leucine-rich repeats)	JGI		ISS
PTHR23155	Panther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	JGI		ISS
PTHR23155:SF267	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
UniRef100_G7K2L1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7K2L1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C3B9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C3B9 related cluster n=1 Tax=unknown RepID=UPI000233C3B9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g09310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g09310

Paralog	Evidence	Comments
Glyma01g36110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g09310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g087900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g09310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g09310

Limit To All Plant Sequences

>Glyma11g09310.1   sequence type=CDS   gene model=Glyma11g09310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGTTTGAATTCGGTGGAGGAGGTGGTGGAGGAGATAATGAGGATTCACAGATCCCTTCCAGCCCGGCCAGGGATAGACGAAGTCGAAGTGGCTAGAGGTTTGATCGGGAATGTTGAAAAAGAAGACCAGGCGAGGCTCCAAGCCATAGCGCGGCAGAGCAAGGGCGTTCATGTGCCCCAAGAGCTCTTCATGGTGCTCCAGGAGATGCAGAGGAACTTCCTTTATCACCAGAGCAAGGACCAGATAAGAGAGGCCGTCAAACTCCTCGATCTCGATAACGTCCATTCCCTGTTCGATGAATTGATTCAGAGAGCTTCCAAGTGTGTTGCTTCTCCCTCTTCCAAAACAAGTTACTCTAACGCTAACGGCTCTGCTTCCTCGGTTTCTACCAGCTTGTCCAAGAATTCGGTTTCTGTGGGCGGTTTTGATAAGCCGCCACTTGCCCCTGCTGCTACTACTTCTAGAAAGTTCCACGCAGAGAAAGAACGTTCTGAGTTGGTCACTCGAGATGACAGTTATGTGAAGAAGTCCAAGTCCTCGTTTTACTCTAATGGATATGGAATTGAACCCACTATCCCATCAAAATCAAGTATTTTGGATTCGTCATTAAAACCTACAACCACTGCAGGTCAAGATGGGGATAAGTTGAGTTTGATCAAGCTTGCTAGCTTAATTGAAGTGTCTGCGAAGAAAGGGACTCGTGATCTCAAACTGCAGAACAAGTTGATGGATCAGGTTGATTGGCTACCTGACTCAATAGGGAAGTTGTCCAGCTTGGTGACTCTCGATTTGTCTGAGAATCGGATTGTGGCCCTACCTGCTACCATTGGAGGGCTTTCGTCGTTGACCAGATTGGACTTGCATTCCAATAGAATCACGGAGCTTCCTGATTCTGTTGGAAATCTCCTTAGTCTGGTTTATCTTGATCTGAGGGGAAATCAGTTAACACTATTGCCTGCTTCTTTTAGCAGGTTGGTGCGTCTAGAGGAGCTTGATTTGAGTTCAAATCAGCTTTCAGCACTTCCTGATACTATAGGGTCGCTTGTTAGGCTTAAAATATTGAATGTGGAAACAAATGATATAGAGGAACTTCCACATTCTGTTGGTAGTTGTTCTTCCCTTAGGGAGCTTCGCATTGACTATAACCGGCTTAAGGCCCTTCCCGAAGCTGTTGGAAAGATTCAGAGCCTGGAGATTTTGTCTGTGCGGTACAATAACATCAAACAACTACCTACAACAATGTCATCCCTAACAAACCTCAAGGAACTTAATGTGAGTTTCAATGAGCTTGAGTCGGTGCCTGAGAGCTTGTGTTTTGCCACCTCTCTTGTCAAGATGAACATAGGAAACAATTTTGCTGACATGAGATCCTTACCGAGATCCATTGGGAACCTTGAATTGCTTGAGGAATTGGATATCAGCAATAATCAGATACGTGTGCTTCCTGAATCGTTTAGGATGCTCACTCAACTACGCATCCTGCGAGCAGAAGAGAATCCTCTTGAAGTCCCACCAAGAGAAATAGCTGATAAGGGAGCTCAGGCTGTTGTCCAGTACATGGCTGAGCTTGTTGAGAAGAGGGAAAAGAAGGATGTTAAAGCACAGCCACTAAAGCAGAAAAAGAGTTGGGCTCAGATCTGCTTCTTTTCAAAGTCTAACAAAAGAAAGCGTGACGGGGTTGATTATGTGAAAACCTGA

Predicted protein sequences of Glyma11g09310

Limit To All Plant Sequences

>Glyma11g09310.1   sequence type=predicted peptide   gene model=Glyma11g09310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECLNSVEEVVEEIMRIHRSLPARPGIDEVEVARGLIGNVEKEDQARLQAIARQSKGVHVPQELFMVLQEMQRNFLYHQSKDQIREAVKLLDLDNVHSLFDELIQRASKCVASPSSKTSYSNANGSASSVSTSLSKNSVSVGGFDKPPLAPAATTSRKFHAEKERSELVTRDDSYVKKSKSSFYSNGYGIEPTIPSKSSILDSSLKPTTTAGQDGDKLSLIKLASLIEVSAKKGTRDLKLQNKLMDQVDWLPDSIGKLSSLVTLDLSENRIVALPATIGGLSSLTRLDLHSNRITELPDSVGNLLSLVYLDLRGNQLTLLPASFSRLVRLEELDLSSNQLSALPDTIGSLVRLKILNVETNDIEELPHSVGSCSSLRELRIDYNRLKALPEAVGKIQSLEILSVRYNNIKQLPTTMSSLTNLKELNVSFNELESVPESLCFATSLVKMNIGNNFADMRSLPRSIGNLELLEELDISNNQIRVLPESFRMLTQLRILRAEENPLEVPPREIADKGAQAVVQYMAELVEKREKKDVKAQPLKQKKSWAQICFFSKSNKRKRDGVDYVKT*

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