SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G35640 | AT | Annotation by Michelle Graham. TAIR10: serine acetyltransferase 3;2 | chr4:16905755-16907977 REVERSE LENGTH=355 | SoyBase | E_val: 2.00E-155 | ISS |
| GO:0000103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfate assimilation | SoyBase | N/A | ISS |
| GO:0006535 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process from serine | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009001 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine O-acetyltransferase activity | SoyBase | N/A | ISS |
| GO:0016407 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acetyltransferase activity | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| KOG4750 | KOG | Serine O-acetyltransferase | JGI | ISS | |
| PTHR23416 | Panther | SIALIC ACID SYNTHASE-RELATED | JGI | ISS | |
| PTHR23416:SF11 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF06426 | PFAM | Serine acetyltransferase, N-terminal | JGI | ISS | |
| UniRef100_G7K010 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Serine acetyltransferase n=1 Tax=Medicago truncatula RepID=G7K010_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D58B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D58B related cluster n=1 Tax=unknown RepID=UPI000233D58B | SoyBase | E_val: 0 | ISS |
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Glyma11g08931 not represented in the dataset |
Glyma11g08931 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g36460 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g084100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g08931.1 sequence type=CDS gene model=Glyma11g08931 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTGTCTGAGCCGCTACCACCACCACCACCACCCCCGCGGCGCCACCTGGCTCTCTTCCCCTGACGAAATGCTCCAACACTGCCCCCTCTCCGCCCACCACCGCCGTCTCCGCGATGACGACGCCGAACCTATCTACCTTCCCTCTCTCTCCTCCGCCTACCGCATCTTCCCCGTCTACGCCATGGGCGCCCCCGACCCGACACCAGAACCCGAATTAGACGGACCCGACCCGATTTGGAACGCTGTCAGGGACGAAGCCAAGCTCGAGGCGGAGAAGGAGCCGATTCTGAGTAGCTTCTTGTACGCTAGCATTTTGGCGCATGATTGCTTGGAGCAAGCATTGGCGTTTGTCGCCGCTAATCGTCTCCAAAACCCTACTCTCTTGGCCACTCAGCTTATGGATATCTTCTGCAATGTCATTTTGCATGACAAAGCTATCCAGCGATCCATTCGCCTTGATGTTCAGGCATTTAAAGATCGTGACCCTGCTTGTTTGTCGTATTGCTCCGCGCTTTTGTATATGAAGGGTTATCATGCTCTGCAAGTACATCGGGTAGCCCATACATTATGGCACCAGGGGCGCAAAGTCTTGGCCCTAGCTTTGCAAAGTCGTGTTAGTGAGGTTTTTGGTGTGGACATTCATCCAGCTGCGAAAATTGGGGAGGGGATTTTATTAGATCATGGGACAGGTGTGGTTATTGGTGAAACTGCTATTGTTGGAAACAGAGTTTCACTGATGCATGGTGTAACATTAGGAGGCACGGGGAAGGAAATAGGTGATCGCCATCCCAAAGTAGGTGAAGGGGCACTAATTGGAGCTAGTGCAACTATACTTGGAAATATAAAGATTGGTGAAGGTGCCATGATTGCTGCGGGTTCCCTGGTGTTAAAAGATGTCCCTCCTCACTGCATTGCGGCAGGAATACCAGCTAAAGTCATTAGTGGTCTACAGGAGCATGACCCATCTTTAACCATGAAGCATGATGCTACTAAAGATTTTTTCACACATGTAGCTACTAACTTCAGAGATGAAAAACCCAATGGAGCGCAGCATCCAGATAGAAATGAAGTGAACATTTGA
>Glyma11g08931.1 sequence type=predicted peptide gene model=Glyma11g08931 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACLSRYHHHHHPRGATWLSSPDEMLQHCPLSAHHRRLRDDDAEPIYLPSLSSAYRIFPVYAMGAPDPTPEPELDGPDPIWNAVRDEAKLEAEKEPILSSFLYASILAHDCLEQALAFVAANRLQNPTLLATQLMDIFCNVILHDKAIQRSIRLDVQAFKDRDPACLSYCSALLYMKGYHALQVHRVAHTLWHQGRKVLALALQSRVSEVFGVDIHPAAKIGEGILLDHGTGVVIGETAIVGNRVSLMHGVTLGGTGKEIGDRHPKVGEGALIGASATILGNIKIGEGAMIAAGSLVLKDVPPHCIAAGIPAKVISGLQEHDPSLTMKHDATKDFFTHVATNFRDEKPNGAQHPDRNEVNI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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