Glyma11g08920 - SoyBase

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Report for Sequence Feature Glyma11g08920

Feature Type:	gene_model
Chromosome:	Gm11
Start:	6296565
stop:	6300821
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g08920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35260	AT	Annotation by Michelle Graham. TAIR10: isocitrate dehydrogenase 1 \| chr4:16774494-16776233 REVERSE LENGTH=367	SoyBase	E_val: 0	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006099	GO-bp	Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle	SoyBase	N/A	ISS
GO:0006102	GO-bp	Annotation by Michelle Graham. GO Biological Process: isocitrate metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009060	GO-bp	Annotation by Michelle Graham. GO Biological Process: aerobic respiration	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0004449	GO-mf	Annotation by Michelle Graham. GO Molecular Function: isocitrate dehydrogenase (NAD+) activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016616	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0051287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NAD binding	SoyBase	N/A	ISS
KOG0784	KOG	Isocitrate dehydrogenase, gamma subunit	JGI		ISS
PTHR11835	Panther	DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE	JGI		ISS
PTHR11835:SF5	Panther	3-ISOPROPYLMALATE DEHYDROGENASE	JGI		ISS
PF00180	PFAM	Isocitrate/isopropylmalate dehydrogenase	JGI		ISS
UniRef100_B9SRZ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isocitrate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9SRZ2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LI93	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LI93_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g08920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g08920 not represented in the dataset	Glyma11g08920 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g08920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g084000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g08920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g08920

Limit To All Plant Sequences

>Glyma11g08920.1   sequence type=CDS   gene model=Glyma11g08920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACGACACGATCCGCGCCGCTCCTCAAGCACCTCCTCACCCGTCTCAACCCTTCTCGCTCCGTCACGTACATGCCCCGTCCCGGCGACGGCACCCCTCGCGGCGTGACGCTGATCCCGGGCGACGGAATCGGGCCTCTAGTAACCGGCGCGGTGGAGCAGGTGATGGAGGCGATGCACGCGCCGCTGTACTTCGAGAAGTACGAGGTGCACGGCGACATGAAGGCGGTGCCGGCGGAGGTGCTGGAATCGATCAGGAAGAACAAGGTATGTCTGAAGGGAGGACTGGCCACTCCCATGGGCGGTGGAGTGAACTCGCTGAACGTGCAGCTGAGGAAGGAGCTCGATCTCTACGCCTCGCTCGTGAACTGCTTCAACCTCCCTGGCCTCCCCACGCGCCACGACAACGTTGACATCGTCGTCATCAGGGAGAACACCGAGGGCGAGTACTCCGGCCTCGAACACGAGGTCGTCCCCGGCGTGGTCGAAAGCCTCAAGGTAATAACAAAGTTCTGCTCAGAGCGCATTGCTAAATATGCTTTTGAGTATGCTTACCTAAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAACTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAGGTATCCTGGAATCAAGTACAATGAAATTATTGTAGACAACTGCTGCATGCAGCTTGTTTCAAAACCGGAGCAGTTTGATGTCATGGTAACCCCCAATCTTTATGGAAATCTTGTTGCAAATACAGCGGCAGGTATTGCTGGAGGCACTGGAGTCATGCCGGGAGGTAATGTTGGGGCTGATCACGCTGTGTTTGAACAAGGTGCTTCAGCAGGAAATGTTGGCAATGATAAAGTAGTAGAACAACAGAAAGCGAACCCAGTGGCACTCCTTCTCTCGTCGGCCATGATGCTTAGACATCTCCAGTTTCCTGCATTTGCTGACCGATTGGAAACTGCCGTTAAAAAAGTGATTCTGGAAGGCAAATATCGGACAAAGGACCTTGGAGGGACAAGCACCACCCAAGAGGTTGTTGATGCAGTGATAGATGCTTTAGACTGA

Predicted protein sequences of Glyma11g08920

Limit To All Plant Sequences

>Glyma11g08920.1   sequence type=predicted peptide   gene model=Glyma11g08920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTRSAPLLKHLLTRLNPSRSVTYMPRPGDGTPRGVTLIPGDGIGPLVTGAVEQVMEAMHAPLYFEKYEVHGDMKAVPAEVLESIRKNKVCLKGGLATPMGGGVNSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATRYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNDKVVEQQKANPVALLLSSAMMLRHLQFPAFADRLETAVKKVILEGKYRTKDLGGTSTTQEVVDAVIDALD*

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