SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma11g08710): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma11g08710): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma11g08710

Feature Type:gene_model
Chromosome:Gm11
Start:6151011
stop:6151193
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g08710
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G35783AT Annotation by Michelle Graham. TAIR10: ROTUNDIFOLIA like 6 | chr4:16952612-16952800 FORWARD LENGTH=62 SoyBaseE_val: 2.00E-11ISS
PF08137PFAM DVL family JGI ISS
UniRef100_G7JYS7UniRef Annotation by Michelle Graham. Most informative UniRef hit: DVL17 n=1 Tax=Medicago truncatula RepID=G7JYS7_MEDTR SoyBaseE_val: 8.00E-09ISS
UniRef100_I1LI71UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LI71_SOYBN SoyBaseE_val: 3.00E-36ISS

Expression Patterns of Glyma11g08710
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g08710 not represented in the dataset
Glyma11g08710 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g08710 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g082100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g08710
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g08710
>Glyma11g08710.1   sequence type=CDS   gene model=Glyma11g08710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCAAAGCGCATCACGTACAACACATAATAGAGGAGAGTTTAGCGGTGGTGGATGCCCTGTTCATTCAAAACGGCAAGGGCGCTTTGCCATCATAAAGGAGCACAAATCCAGATTGTATATTGTCAGAAGATGTATACTGATGCTAATTTGTTGGCACAAATACAAAATTAGTGAGTAA
Predicted protein sequences of Glyma11g08710
>Glyma11g08710.1   sequence type=predicted peptide   gene model=Glyma11g08710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQSASRTTHNRGEFSGGGCPVHSKRQGRFAIIKEHKSRLYIVRRCILMLICWHKYKISE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo