SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G05970 | AT | Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:1816253-1816991 REVERSE LENGTH=200 | SoyBase | E_val: 9.00E-60 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| UniRef100_C6TMT0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TMT0_SOYBN | SoyBase | E_val: 1.00E-147 | ISS |
| UniRef100_Q2HRG6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding region RNP-1 (RNA recognition motif) n=1 Tax=Medicago truncatula RepID=Q2HRG6_MEDTR | SoyBase | E_val: 7.00E-108 | ISS |
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Glyma11g08650 not represented in the dataset |
Glyma11g08650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g081600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g08650.4 sequence type=transcript gene model=Glyma11g08650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTCTTGGACTTACCCTCTCTCTGCCAATGAGCAATCTTCAACCCAGACAGGCCGCGCGGGAGTGAGTCATCCACCATCATAGACACGTTGTTCGTTTCCTTTCCTTTCTGCAATTTCTACCCTAACACGCCTTCATTTCTGGGCACATTTTTTTACACGTTTCAAATGCGTTAGGACACACATCTTGTTTGCTTGCTTTCAGACAACGCTTATGGATTCAACCAAGGGCTTTGCTCTCTCTCCCTCTCCCTAATCCTAGTTTCTCTCATGACCCAACATTCCAGCGACTGATTTCTCACTCTCCAGCAACTAGGTTTGATTCACTTTATTGCATGGAGTCATCAGCAGAAAAGTATGCTGCATTTAAACAGAAAGTTAGTAGGACAGTGTACTTGGACAACATGTCACCACAAGTCACTGAATCTGTGATAAGAACTGCTCTTGACCAGTTTGCAACTGTGAAAAATGTCAAGTTTATTCCCAACTACATCGGTCCAAGCAATCAGCCACAGTGTGCATTAGTAGAATTAGATTCTGCCAAAAAGGCCAAGGAAATTTTATCAATGATAGCGGGTTATCCTTTCATGATGTCTGGGCAGCCACGGCCTGTGAGGGCTCGGCCTGCTGTGATGGAAATGTTTGATGATCAACCAATAAAGCCTAACAGAAAGATCAAGATCCGTTGGTTGGAGCCTAGTGATCCTGATTTTGAGCTGGCAAAGGAAGTAAAGAATCTTACTCGCAAACATGCTGCAGAAGTAGAATTCCTTGACAAACTGCTACTAGAAGACGAAGAGAAGCTAGCAAAGCAGCAGGAAGAGACACTTAAGGTGCATTACAAAAAGTTTAAGATGATAGAGGGCATTATGGCTGACAAAACTGCTCATCGTTTGGCACGAAAGTATAATCTACATGTTGCAGATGATTGGGCTCGTTTGGATTAACAACTTATGTAAATAGCTTTTTAGTTTTCCTTGCTAGGATTTAAGGTTTGTTGCTTCTTTCTACTCCCACTACTACTACTAAAGAAGCTCAGATCATACATGTTATATGATATGCTCTTTGATCCATGCCCAAGATCACCTTTTGTTTCGTTTTCTTTTGATTCAGAGTAGGGTGTTGGTGGTAATATAAATTTAACTTCGCCAGATTTATTTTTCCCTTAAATTGATTATGGTAATCCATATTTTCCTTTTAGAGCATTATTTTTTATCCCTAGAAATTGAATACAGTACTA
>Glyma11g08650.3 sequence type=CDS gene model=Glyma11g08650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCATCAGCAGAAAAGTATGCTGCATTTAAACAGAAAGTTAGTAGGACAGTGTACTTGGACAACATGTCACCACAAGTCACTGAATCTGTGATAAGAACTGCTCTTGACCAGTTTGCAACTGTGAAAAATGTCAAGTTTATTCCCAACTACATCGGTCCAAGCAATCAGCCACAGTGTGCATTAGTAGAATTAGATTCTGCCAAAAAGGCCAAGGAAATTTTATCAATGATAGCGGGTTATCCTTTCATGATGTCTGGGCAGCCACGGCCTGTGAGGGCTCGGCCTGCTGTGATGGAAATGTTTGATGATCAACCAATAAAGCCTAACAGAAAGATCAAGATCCGTTGGTTGGAGCCTAGTGATCCTGATTTTGAGCTGGCAAAGGAAGTAAAGAATCTTACTCGCAAACATGCTGCAGAAGTAGAATTCCTTGACAAACTGCTACTAGAAGACGAAGAGAAGCTAGCAAAGCAGCAGGAAGAGACACTTAAGGTGCATTACAAAAAGTTTAAGATGATAGAGGGCATTATGGCTGACAAAACTGCTCATCGTTTGGCACGAAAGTATAATCTACATGTTGCAGATGATTGGGCTCGTTTGGATTAA >Glyma11g08650.4 sequence type=CDS gene model=Glyma11g08650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCATCAGCAGAAAAGTATGCTGCATTTAAACAGAAAGTTAGTAGGACAGTGTACTTGGACAACATGTCACCACAAGTCACTGAATCTGTGATAAGAACTGCTCTTGACCAGTTTGCAACTGTGAAAAATGTCAAGTTTATTCCCAACTACATCGGTCCAAGCAATCAGCCACAGTGTGCATTAGTAGAATTAGATTCTGCCAAAAAGGCCAAGGAAATTTTATCAATGATAGCGGGTTATCCTTTCATGATGTCTGGGCAGCCACGGCCTGTGAGGGCTCGGCCTGCTGTGATGGAAATGTTTGATGATCAACCAATAAAGCCTAACAGAAAGATCAAGATCCGTTGGTTGGAGCCTAGTGATCCTGATTTTGAGCTGGCAAAGGAAGTAAAGAATCTTACTCGCAAACATGCTGCAGAAGTAGAATTCCTTGACAAACTGCTACTAGAAGACGAAGAGAAGCTAGCAAAGCAGCAGGAAGAGACACTTAAGGTGCATTACAAAAAGTTTAAGATGATAGAGGGCATTATGGCTGACAAAACTGCTCATCGTTTGGCACGAAAGTATAATCTACATGTTGCAGATGATTGGGCTCGTTTGGATTAA
>Glyma11g08650.3 sequence type=predicted peptide gene model=Glyma11g08650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESSAEKYAAFKQKVSRTVYLDNMSPQVTESVIRTALDQFATVKNVKFIPNYIGPSNQPQCALVELDSAKKAKEILSMIAGYPFMMSGQPRPVRARPAVMEMFDDQPIKPNRKIKIRWLEPSDPDFELAKEVKNLTRKHAAEVEFLDKLLLEDEEKLAKQQEETLKVHYKKFKMIEGIMADKTAHRLARKYNLHVADDWARLD* >Glyma11g08650.4 sequence type=predicted peptide gene model=Glyma11g08650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESSAEKYAAFKQKVSRTVYLDNMSPQVTESVIRTALDQFATVKNVKFIPNYIGPSNQPQCALVELDSAKKAKEILSMIAGYPFMMSGQPRPVRARPAVMEMFDDQPIKPNRKIKIRWLEPSDPDFELAKEVKNLTRKHAAEVEFLDKLLLEDEEKLAKQQEETLKVHYKKFKMIEGIMADKTAHRLARKYNLHVADDWARLD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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