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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma11g08430

Feature Type:gene_model
Chromosome:Gm11
Start:5970174
stop:5976464
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G35920AT Annotation by Michelle Graham. TAIR10: PLAC8 family protein | chr4:17012106-17014192 REVERSE LENGTH=421 SoyBaseE_val: 0ISS
GO:0006655GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process SoyBaseN/AISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0007020GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule nucleation SoyBaseN/AISS
GO:0007231GO-bp Annotation by Michelle Graham. GO Biological Process: osmosensory signaling pathway SoyBaseN/AISS
GO:0007638GO-bp Annotation by Michelle Graham. GO Biological Process: mechanosensory behavior SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0033500GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate homeostasis SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005887GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR15907Panther FAMILY NOT NAMED JGI ISS
PTHR15907:SF3Panther SUBFAMILY NOT NAMED JGI ISS
PF04749PFAM PLAC8 family JGI ISS
UniRef100_G7LB65UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cornifelin n=1 Tax=Medicago truncatula RepID=G7LB65_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LI39UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LI39_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g08430 not represented in the dataset

Glyma11g08430 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g36860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g079500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g08430.2   sequence type=transcript   gene model=Glyma11g08430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTTCTTACAATCACCGTTATAATTTATTCCATTCTTTTGTGATGAAATTAAGGATTATAATGCAATTTTTGGCAACTGATGTTCTGAGCTGATGTAGCTGGATTTCAGGTTGATTTGCAGAGAGCATGGCGTCTTGGGATCAAATGGGGGAACTTGCAAATGTGGCACAGTTGACTGGTGTAGATGCTGTGCGGCTGATTGGGATGATTGTGAGAGCTGCAAGCACTGCACGGATGCATAAGAAAAACTGCAGGCAGTTTGCACAGCATCTGAAGTTGATTGGGAACTTGCTGGAGCAGCTCAAGATCTCGGAGCTGAAGAAGTACCCGGAAACTAGGGAGCCTCTGGAGCAGCTGGAAGATGCTCTCAGAAGATCTTATATATTGGTCAATAGCTGTCAGGACAGGAGCTACCTTTATTTGCTCGCTATGGGCTGGAACATTGTTTATCAGTTCAGGAAGGCTCAAAACGAAATCGATAGATACCTGCGTCTGGTTCCTCTCATTACTCTTGTGGACAATTCTCGAGTCAGGGAGAGACTTGAAGTTATCGAAATGGATCAACGTGAATACACATTGGATGATGAGGACCAAAAGGCACAAACAGTTATTTTTAAACCTGAGCCTGACAAGGATGACACTGCTGTGTTGAAGAAAACACTATCATGTTCTTACCCCAACTGTTCTTTCACTGAAGCACTTAAAAAAGAAAATGAAAAGCTTAAACTAGAACTACAACGGTCACAAGCAAATTTGGATATGAATCAGTGTGAAGTCATTCAACGTTTACTAGATGTCACAGAAGTTGCAGCTTATTCTGTTCCAGCCAAGTGTTCACCGGAGAAAAGTCACAAGAAAGAGGAATACAATTACTCTGATGTCAACAGTGACCAGGACCATTCATCTGATGAAAAATACCATGCAAAAATTGACAAGCATTCACCATCAAGATATTCAGTTGCGCAAAAGGATCTGGCATCAACTGGAGGTTCATATCAGCAGGAAGATTGGCACACTGATTTACTCGCTTGTTGTTCTGAACCTTCTCTTTGTATGAAGACATTCTTCTATCCTTGTGGAACATTTTCAAAGATTGCTTCTGTTGCAAGAAACAGGCCCATATCATCTGGAGAAGCATGTAATGACTTGATGGCATATTCGTTAATTTTGTCTTGTTGTTGCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCCTTGTGCAAGAATGGAGAGAAGTGGAGATCCGTGGGCTTACTGGTTCTGAGAAGACCAAAACAAGCCCTCCACCCTCTCAGTACATGGAATCTTAACTAACAAATGAGATTATCATTTGGTTGTTCGGGATTCAAGGTTCCTTGAAGACCTTATTAAAATAGAGGCTATTTGGCTATATTAGAATTCTCACAGGAAGGCAGGAATTATGTATTTTTATTCTCACCGCACCTGGCCTCGTTTTAACTATGTATAGTAATTTTATTTTGTTGTACTCGAAAAAAATTGCTATTAGATATAGTTGATGGTGTATCATAAACCTTTTTTTTTTTGTTTCCCTGGTTTAATATAGTCTGAATTAATTTCTTGTCATGTTTTGTCT

>Glyma11g08430.1   sequence type=CDS   gene model=Glyma11g08430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCTTGGGATCAAATGGGGGAACTTGCAAATGTGGCACAGTTGACTGGTGTAGATGCTGTGCGGCTGATTGGGATGATTGTGAGAGCTGCAAGCACTGCACGGATGCATAAGAAAAACTGCAGGCAGTTTGCACAGCATCTGAAGTTGATTGGGAACTTGCTGGAGCAGCTCAAGATCTCGGAGCTGAAGAAGTACCCGGAAACTAGGGAGCCTCTGGAGCAGCTGGAAGATGCTCTCAGAAGATCTTATATATTGGTCAATAGCTGTCAGGACAGGAGCTACCTTTATTTGCTCGCTATGGGCTGGAACATTGTTTATCAGTTCAGGAAGGCTCAAAACGAAATCGATAGATACCTGCGTCTGGTTCCTCTCATTACTCTTGTGGACAATTCTCGAGTCAGGGAGAGACTTGAAGTTATCGAAATGGATCAACGTGAATACACATTGGATGATGAGGACCAAAAGGCACAAACAGTTATTTTTAAACCTGAGCCTGACAAGGATGACACTGCTGTGTTGAAGAAAACACTATCATGTTCTTACCCCAACTGTTCTTTCACTGAAGCACTTAAAAAAGAAAATGAAAAGCTTAAACTAGAACTACAACGGTCACAAGCAAATTTGGATATGAATCAGTGTGAAGTCATTCAACGTTTACTAGATGTCACAGAAGTTGCAGCTTATTCTGTTCCAGCCAAGTGTTCACCGGAGAAAAGTCACAAGAAAGAGGAATACAATTACTCTGATGTCAACAGTGACCAGGACCATTCATCTGATGAAAAATACCATGCAAAAATTGACAAGCATTCACCATCAAGATATTCAGTTGCGCAAAAGGATCTGGCATCAACTGGAGGTTCATATCAGCAGGAAGATTGGCACACTGATTTACTCGCTTGTTGTTCTGAACCTTCTCTTTGTATGAAGACATTCTTCTATCCTTGTGGAACATTTTCAAAGATTGCTTCTGTTGCAAGAAACAGGCCCATATCATCTGGAGAAGCATGTAATGACTTGATGGCATATTCGTTAATTTTGTCTTGTTGTTGCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCCTTGTGCAAGAATGGAGAGAAGTGGAGATCCGTGGGCTTACTGGTTCTGAGAAGACCAAAACAAGCCCTCCACCCTCTCAGTACATGGAATCTTAA

>Glyma11g08430.2   sequence type=CDS   gene model=Glyma11g08430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCTTGGGATCAAATGGGGGAACTTGCAAATGTGGCACAGTTGACTGGTGTAGATGCTGTGCGGCTGATTGGGATGATTGTGAGAGCTGCAAGCACTGCACGGATGCATAAGAAAAACTGCAGGCAGTTTGCACAGCATCTGAAGTTGATTGGGAACTTGCTGGAGCAGCTCAAGATCTCGGAGCTGAAGAAGTACCCGGAAACTAGGGAGCCTCTGGAGCAGCTGGAAGATGCTCTCAGAAGATCTTATATATTGGTCAATAGCTGTCAGGACAGGAGCTACCTTTATTTGCTCGCTATGGGCTGGAACATTGTTTATCAGTTCAGGAAGGCTCAAAACGAAATCGATAGATACCTGCGTCTGGTTCCTCTCATTACTCTTGTGGACAATTCTCGAGTCAGGGAGAGACTTGAAGTTATCGAAATGGATCAACGTGAATACACATTGGATGATGAGGACCAAAAGGCACAAACAGTTATTTTTAAACCTGAGCCTGACAAGGATGACACTGCTGTGTTGAAGAAAACACTATCATGTTCTTACCCCAACTGTTCTTTCACTGAAGCACTTAAAAAAGAAAATGAAAAGCTTAAACTAGAACTACAACGGTCACAAGCAAATTTGGATATGAATCAGTGTGAAGTCATTCAACGTTTACTAGATGTCACAGAAGTTGCAGCTTATTCTGTTCCAGCCAAGTGTTCACCGGAGAAAAGTCACAAGAAAGAGGAATACAATTACTCTGATGTCAACAGTGACCAGGACCATTCATCTGATGAAAAATACCATGCAAAAATTGACAAGCATTCACCATCAAGATATTCAGTTGCGCAAAAGGATCTGGCATCAACTGGAGGTTCATATCAGCAGGAAGATTGGCACACTGATTTACTCGCTTGTTGTTCTGAACCTTCTCTTTGTATGAAGACATTCTTCTATCCTTGTGGAACATTTTCAAAGATTGCTTCTGTTGCAAGAAACAGGCCCATATCATCTGGAGAAGCATGTAATGACTTGATGGCATATTCGTTAATTTTGTCTTGTTGTTGCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCCTTGTGCAAGAATGGAGAGAAGTGGAGATCCGTGGGCTTACTGGTTCTGAGAAGACCAAAACAAGCCCTCCACCCTCTCAGTACATGGAATCTTAA

>Glyma11g08430.1   sequence type=predicted peptide   gene model=Glyma11g08430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASWDQMGELANVAQLTGVDAVRLIGMIVRAASTARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYILVNSCQDRSYLYLLAMGWNIVYQFRKAQNEIDRYLRLVPLITLVDNSRVRERLEVIEMDQREYTLDDEDQKAQTVIFKPEPDKDDTAVLKKTLSCSYPNCSFTEALKKENEKLKLELQRSQANLDMNQCEVIQRLLDVTEVAAYSVPAKCSPEKSHKKEEYNYSDVNSDQDHSSDEKYHAKIDKHSPSRYSVAQKDLASTGGSYQQEDWHTDLLACCSEPSLCMKTFFYPCGTFSKIASVARNRPISSGEACNDLMAYSLILSCCCYTCCVRRKLRKMLNITGGFIDDFLSHLMCCCCALVQEWREVEIRGLTGSEKTKTSPPPSQYMES*

>Glyma11g08430.2   sequence type=predicted peptide   gene model=Glyma11g08430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASWDQMGELANVAQLTGVDAVRLIGMIVRAASTARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYILVNSCQDRSYLYLLAMGWNIVYQFRKAQNEIDRYLRLVPLITLVDNSRVRERLEVIEMDQREYTLDDEDQKAQTVIFKPEPDKDDTAVLKKTLSCSYPNCSFTEALKKENEKLKLELQRSQANLDMNQCEVIQRLLDVTEVAAYSVPAKCSPEKSHKKEEYNYSDVNSDQDHSSDEKYHAKIDKHSPSRYSVAQKDLASTGGSYQQEDWHTDLLACCSEPSLCMKTFFYPCGTFSKIASVARNRPISSGEACNDLMAYSLILSCCCYTCCVRRKLRKMLNITGGFIDDFLSHLMCCCCALVQEWREVEIRGLTGSEKTKTSPPPSQYMES*







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