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Report for Sequence Feature Glyma11g08430
Feature Type: gene_model
Chromosome: Gm11
Start: 5970174
stop: 5976464
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g08430
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G35920 AT
Annotation by Michelle Graham. TAIR10: PLAC8 family protein | chr4:17012106-17014192 REVERSE LENGTH=421
SoyBase E_val: 0 ISS
GO:0006655 GO-bp
Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process
SoyBase N/A ISS
GO:0006816 GO-bp
Annotation by Michelle Graham. GO Biological Process: calcium ion transport
SoyBase N/A ISS
GO:0007020 GO-bp
Annotation by Michelle Graham. GO Biological Process: microtubule nucleation
SoyBase N/A ISS
GO:0007231 GO-bp
Annotation by Michelle Graham. GO Biological Process: osmosensory signaling pathway
SoyBase N/A ISS
GO:0007638 GO-bp
Annotation by Michelle Graham. GO Biological Process: mechanosensory behavior
SoyBase N/A ISS
GO:0019344 GO-bp
Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process
SoyBase N/A ISS
GO:0033500 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate homeostasis
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0005887 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR15907 Panther
FAMILY NOT NAMED
JGI ISS
PTHR15907:SF3 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF04749 PFAM
PLAC8 family
JGI ISS
UniRef100_G7LB65 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cornifelin n=1 Tax=Medicago truncatula RepID=G7LB65_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1LI39 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LI39_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma11g08430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma11g08430
Paralog Evidence Comments
Glyma01g36860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g08430 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g079500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g08430
Transcripts of Glyma11g08430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g08430.2 sequence type=transcript gene model=Glyma11g08430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTTTTTCTTACAATCACCGTTATAATTTATTCCATTCTTTTGTGATGAAATTAAGGATTATAATGCAATTTTTGGCAACTGATGTTCTGAGCTGATGTAGCTGGATTTCAGGTTGATTTGCAGAGAGCATGGCGTCTTGGGATCAAATGGGGGAACTTGCAAATGTGGCACAGTTGACTGGTGTAGATGCTGTGCGGCTGATTGGGATGATTGTGAGAGCTGCAAGCACTGCACGGATGCATAAGAAAAACTGCAGGCAGTTTGCACAGCATCTGAAGTTGATTGGGAACTTGCTGGAGCAGCTCAAGATCTCGGAGCTGAAGAAGTACCCGGAAACTAGGGAGCCTCTGGAGCAGCTGGAAGATGCTCTCAGAAGATCTTATATATTGGTCAATAGCTGTCAGGACAGGAGCTACCTTTATTTGCTCGCTATGGGCTGGAACATTGTTTATCAGTTCAGGAAGGCTCAAAACGAAATCGATAGATACCTGCGTCTGGTTCCTCTCATTACTCTTGTGGACAATTCTCGAGTCAGGGAGAGACTTGAAGTTATCGAAATGGATCAACGTGAATACACATTGGATGATGAGGACCAAAAGGCACAAACAGTTATTTTTAAACCTGAGCCTGACAAGGATGACACTGCTGTGTTGAAGAAAACACTATCATGTTCTTACCCCAACTGTTCTTTCACTGAAGCACTTAAAAAAGAAAATGAAAAGCTTAAACTAGAACTACAACGGTCACAAGCAAATTTGGATATGAATCAGTGTGAAGTCATTCAACGTTTACTAGATGTCACAGAAGTTGCAGCTTATTCTGTTCCAGCCAAGTGTTCACCGGAGAAAAGTCACAAGAAAGAGGAATACAATTACTCTGATGTCAACAGTGACCAGGACCATTCATCTGATGAAAAATACCATGCAAAAATTGACAAGCATTCACCATCAAGATATTCAGTTGCGCAAAAGGATCTGGCATCAACTGGAGGTTCATATCAGCAGGAAGATTGGCACACTGATTTACTCGCTTGTTGTTCTGAACCTTCTCTTTGTATGAAGACATTCTTCTATCCTTGTGGAACATTTTCAAAGATTGCTTCTGTTGCAAGAAACAGGCCCATATCATCTGGAGAAGCATGTAATGACTTGATGGCATATTCGTTAATTTTGTCTTGTTGTTGCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCCTTGTGCAAGAATGGAGAGAAGTGGAGATCCGTGGGCTTACTGGTTCTGAGAAGACCAAAACAAGCCCTCCACCCTCTCAGTACATGGAATCTTAACTAACAAATGAGATTATCATTTGGTTGTTCGGGATTCAAGGTTCCTTGAAGACCTTATTAAAATAGAGGCTATTTGGCTATATTAGAATTCTCACAGGAAGGCAGGAATTATGTATTTTTATTCTCACCGCACCTGGCCTCGTTTTAACTATGTATAGTAATTTTATTTTGTTGTACTCGAAAAAAATTGCTATTAGATATAGTTGATGGTGTATCATAAACCTTTTTTTTTTTGTTTCCCTGGTTTAATATAGTCTGAATTAATTTCTTGTCATGTTTTGTCT
Coding sequences of Glyma11g08430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g08430.1 sequence type=CDS gene model=Glyma11g08430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGTCTTGGGATCAAATGGGGGAACTTGCAAATGTGGCACAGTTGACTGGTGTAGATGCTGTGCGGCTGATTGGGATGATTGTGAGAGCTGCAAGCACTGCACGGATGCATAAGAAAAACTGCAGGCAGTTTGCACAGCATCTGAAGTTGATTGGGAACTTGCTGGAGCAGCTCAAGATCTCGGAGCTGAAGAAGTACCCGGAAACTAGGGAGCCTCTGGAGCAGCTGGAAGATGCTCTCAGAAGATCTTATATATTGGTCAATAGCTGTCAGGACAGGAGCTACCTTTATTTGCTCGCTATGGGCTGGAACATTGTTTATCAGTTCAGGAAGGCTCAAAACGAAATCGATAGATACCTGCGTCTGGTTCCTCTCATTACTCTTGTGGACAATTCTCGAGTCAGGGAGAGACTTGAAGTTATCGAAATGGATCAACGTGAATACACATTGGATGATGAGGACCAAAAGGCACAAACAGTTATTTTTAAACCTGAGCCTGACAAGGATGACACTGCTGTGTTGAAGAAAACACTATCATGTTCTTACCCCAACTGTTCTTTCACTGAAGCACTTAAAAAAGAAAATGAAAAGCTTAAACTAGAACTACAACGGTCACAAGCAAATTTGGATATGAATCAGTGTGAAGTCATTCAACGTTTACTAGATGTCACAGAAGTTGCAGCTTATTCTGTTCCAGCCAAGTGTTCACCGGAGAAAAGTCACAAGAAAGAGGAATACAATTACTCTGATGTCAACAGTGACCAGGACCATTCATCTGATGAAAAATACCATGCAAAAATTGACAAGCATTCACCATCAAGATATTCAGTTGCGCAAAAGGATCTGGCATCAACTGGAGGTTCATATCAGCAGGAAGATTGGCACACTGATTTACTCGCTTGTTGTTCTGAACCTTCTCTTTGTATGAAGACATTCTTCTATCCTTGTGGAACATTTTCAAAGATTGCTTCTGTTGCAAGAAACAGGCCCATATCATCTGGAGAAGCATGTAATGACTTGATGGCATATTCGTTAATTTTGTCTTGTTGTTGCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCCTTGTGCAAGAATGGAGAGAAGTGGAGATCCGTGGGCTTACTGGTTCTGAGAAGACCAAAACAAGCCCTCCACCCTCTCAGTACATGGAATCTTAA
>Glyma11g08430.2 sequence type=CDS gene model=Glyma11g08430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGTCTTGGGATCAAATGGGGGAACTTGCAAATGTGGCACAGTTGACTGGTGTAGATGCTGTGCGGCTGATTGGGATGATTGTGAGAGCTGCAAGCACTGCACGGATGCATAAGAAAAACTGCAGGCAGTTTGCACAGCATCTGAAGTTGATTGGGAACTTGCTGGAGCAGCTCAAGATCTCGGAGCTGAAGAAGTACCCGGAAACTAGGGAGCCTCTGGAGCAGCTGGAAGATGCTCTCAGAAGATCTTATATATTGGTCAATAGCTGTCAGGACAGGAGCTACCTTTATTTGCTCGCTATGGGCTGGAACATTGTTTATCAGTTCAGGAAGGCTCAAAACGAAATCGATAGATACCTGCGTCTGGTTCCTCTCATTACTCTTGTGGACAATTCTCGAGTCAGGGAGAGACTTGAAGTTATCGAAATGGATCAACGTGAATACACATTGGATGATGAGGACCAAAAGGCACAAACAGTTATTTTTAAACCTGAGCCTGACAAGGATGACACTGCTGTGTTGAAGAAAACACTATCATGTTCTTACCCCAACTGTTCTTTCACTGAAGCACTTAAAAAAGAAAATGAAAAGCTTAAACTAGAACTACAACGGTCACAAGCAAATTTGGATATGAATCAGTGTGAAGTCATTCAACGTTTACTAGATGTCACAGAAGTTGCAGCTTATTCTGTTCCAGCCAAGTGTTCACCGGAGAAAAGTCACAAGAAAGAGGAATACAATTACTCTGATGTCAACAGTGACCAGGACCATTCATCTGATGAAAAATACCATGCAAAAATTGACAAGCATTCACCATCAAGATATTCAGTTGCGCAAAAGGATCTGGCATCAACTGGAGGTTCATATCAGCAGGAAGATTGGCACACTGATTTACTCGCTTGTTGTTCTGAACCTTCTCTTTGTATGAAGACATTCTTCTATCCTTGTGGAACATTTTCAAAGATTGCTTCTGTTGCAAGAAACAGGCCCATATCATCTGGAGAAGCATGTAATGACTTGATGGCATATTCGTTAATTTTGTCTTGTTGTTGCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCCTTGTGCAAGAATGGAGAGAAGTGGAGATCCGTGGGCTTACTGGTTCTGAGAAGACCAAAACAAGCCCTCCACCCTCTCAGTACATGGAATCTTAA
Predicted protein sequences of Glyma11g08430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g08430.1 sequence type=predicted peptide gene model=Glyma11g08430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASWDQMGELANVAQLTGVDAVRLIGMIVRAASTARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYILVNSCQDRSYLYLLAMGWNIVYQFRKAQNEIDRYLRLVPLITLVDNSRVRERLEVIEMDQREYTLDDEDQKAQTVIFKPEPDKDDTAVLKKTLSCSYPNCSFTEALKKENEKLKLELQRSQANLDMNQCEVIQRLLDVTEVAAYSVPAKCSPEKSHKKEEYNYSDVNSDQDHSSDEKYHAKIDKHSPSRYSVAQKDLASTGGSYQQEDWHTDLLACCSEPSLCMKTFFYPCGTFSKIASVARNRPISSGEACNDLMAYSLILSCCCYTCCVRRKLRKMLNITGGFIDDFLSHLMCCCCALVQEWREVEIRGLTGSEKTKTSPPPSQYMES*
>Glyma11g08430.2 sequence type=predicted peptide gene model=Glyma11g08430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASWDQMGELANVAQLTGVDAVRLIGMIVRAASTARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYILVNSCQDRSYLYLLAMGWNIVYQFRKAQNEIDRYLRLVPLITLVDNSRVRERLEVIEMDQREYTLDDEDQKAQTVIFKPEPDKDDTAVLKKTLSCSYPNCSFTEALKKENEKLKLELQRSQANLDMNQCEVIQRLLDVTEVAAYSVPAKCSPEKSHKKEEYNYSDVNSDQDHSSDEKYHAKIDKHSPSRYSVAQKDLASTGGSYQQEDWHTDLLACCSEPSLCMKTFFYPCGTFSKIASVARNRPISSGEACNDLMAYSLILSCCCYTCCVRRKLRKMLNITGGFIDDFLSHLMCCCCALVQEWREVEIRGLTGSEKTKTSPPPSQYMES*