SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G17800 | AT | Annotation by Michelle Graham. TAIR10: Arabidopsis RAC-like 1 | chr2:7740313-7741942 FORWARD LENGTH=197 | SoyBase | E_val: 2.00E-126 | ISS |
| GO:0007015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament organization | SoyBase | N/A | ISS |
| GO:0007264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction | SoyBase | N/A | ISS |
| GO:0009734 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005819 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: spindle | SoyBase | N/A | ISS |
| GO:0009524 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG0393 | KOG | Ras-related small GTPase, Rho type | JGI | ISS | |
| PTHR24072 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24072:SF353 | Panther | JGI | ISS | ||
| PF00071 | PFAM | Ras family | JGI | ISS | |
| UniRef100_C6TCP3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TCP3_SOYBN | SoyBase | E_val: 1.00E-142 | ISS |
| UniRef100_Q8S2V3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Rac-like GTP-binding protein n=1 Tax=Medicago truncatula RepID=Q8S2V3_MEDTR | SoyBase | E_val: 2.00E-141 | ISS |
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Glyma11g08380 not represented in the dataset |
Glyma11g08380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g36880 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g079100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g08380.4 sequence type=transcript gene model=Glyma11g08380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTAAAGGCAAAGTAAAAATGGCCAAAAGAAAGTGAAAACTGTATTTATTTATTTTTATTTTTAAAGAAAAAAAAAACAATAAAAAGAGGAGAGTTTGTTGCTGTGCTGGGTTGTATGAGCGGTTCAACAGGAAAATCTCGCGGGCCAAAAAAGGTTTCTCTTTCTTTCTCTATCCTCCGTCAATGCCTTCTCCTCTCACAGTCTTTGTTAGGGTTTCCTTTTTTCCATTTCCTCCCTTTCTCCCACACCATCTCTTTCCGCATTTTCCCAATTAGGATGTGTAATTGAGACAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGAAAATTGAGGGGGTGTGTGATCGGGTCCTCAGGTGAAGATCTGAGGCTGTTGGTGTCTCTTTTCTTTTCTCCGAGTTCCAAAGATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCGATTATGTGCCGACTGTTTTTGACAATTTCAGTGCAAATGTGGTTGTCAATGGGAGCATTGTGAATCTGGGTTTGTGGGATACTGCTGGACAAGAGGATTACAACAGATTAAGACCTTTGAGTTACCGTGGTGCCGATGTTTTCATATTGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGTGGATTCCAGAGTTGAAGCATTATGCACCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGACCTTCGGGATGATAAGCAGTTCTGCATCGACCATCCTGGTGCCGTACCTATTACCACAGCTCAGGGAGAAGAGCTTAGGAAGCTGATTAATGCACCAGCTTACATTGAATGCAGTTCAAAAACACAGGAGAACGTGAAGGCAGTCTTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCTAAGCAGAAGAAAAAGAAGGGTAAAGCACAAAAGGCATGCTCGATATTGTGATTCACTAGGTGTTAACATTTGACTGCCCTTTGTTCTACCTGTATTACCCTCCCCTTCTTTCTTTTTATCATTTCTTTGTTATTGAAGAAGTTGGAGTAGTTTGTGGGTGTTCCTCAGACAAATACTCTAGATCTCCTTGAAGCATAAGGTGGGTTAATGCTTTGCTTTCTTTGAATTATTGTCAACTCTAATAGTCAAATTTGCATTTCATGGTTCCCACCTTTTTTTCCTATAACTTTCGTTTTGATTAATGTATTAATAGACTGGAATATCCCAGTTAGGATAACGACCTTGTTTGCTTGAAGATATATATTTAAAGTATATTATTTTTCAATTCAAGGTATGGCTATGTGTACAG
>Glyma11g08380.3 sequence type=CDS gene model=Glyma11g08380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCGATTATGTGCCGACTGTTTTTGACAATTTCAGTGCAAATGTGGTTGTCAATGGGAGCATTGTGAATCTGGGTTTGTGGGATACTGCTGGACAAGAGGATTACAACAGATTAAGACCTTTGAGTTACCGTGGTGCCGATGTTTTCATATTGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGTGGATTCCAGAGTTGAAGCATTATGCACCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGACCTTCGGGATGATAAGCAGTTCTGCATCGACCATCCTGGTGCCGTACCTATTACCACAGCTCAGGGAGAAGAGCTTAGGAAGCTGATTAATGCACCAGCTTACATTGAATGCAGTTCAAAAACACAGGAGAACGTGAAGGCAGTCTTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCTAAGCAGAAGAAAAAGAAGGGTAAAGCACAAAAGGCATGCTCGATATTGTGA >Glyma11g08380.4 sequence type=CDS gene model=Glyma11g08380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCGATTATGTGCCGACTGTTTTTGACAATTTCAGTGCAAATGTGGTTGTCAATGGGAGCATTGTGAATCTGGGTTTGTGGGATACTGCTGGACAAGAGGATTACAACAGATTAAGACCTTTGAGTTACCGTGGTGCCGATGTTTTCATATTGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGTGGATTCCAGAGTTGAAGCATTATGCACCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGACCTTCGGGATGATAAGCAGTTCTGCATCGACCATCCTGGTGCCGTACCTATTACCACAGCTCAGGGAGAAGAGCTTAGGAAGCTGATTAATGCACCAGCTTACATTGAATGCAGTTCAAAAACACAGGAGAACGTGAAGGCAGTCTTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCTAAGCAGAAGAAAAAGAAGGGTAAAGCACAAAAGGCATGCTCGATATTGTGA
>Glyma11g08380.3 sequence type=predicted peptide gene model=Glyma11g08380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSIVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFCIDHPGAVPITTAQGEELRKLINAPAYIECSSKTQENVKAVFDAAIRVVLQPPKQKKKKGKAQKACSIL* >Glyma11g08380.4 sequence type=predicted peptide gene model=Glyma11g08380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSIVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFCIDHPGAVPITTAQGEELRKLINAPAYIECSSKTQENVKAVFDAAIRVVLQPPKQKKKKGKAQKACSIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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