SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66120 | AT | Annotation by Michelle Graham. TAIR10: 3-dehydroquinate synthase, putative | chr5:26431516-26433649 REVERSE LENGTH=442 | SoyBase | E_val: 0 | ISS |
| GO:0006744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process | SoyBase | N/A | ISS |
| GO:0009073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003856 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-dehydroquinate synthase activity | SoyBase | N/A | ISS |
| PTHR21090 | Panther | AROM/DEHYDROQUINATE SYNTHASE | JGI | ISS | |
| PF01761 | PFAM | 3-dehydroquinate synthase | JGI | ISS | |
| UniRef100_G3E7M4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 3-dehydroquinate synthase n=1 Tax=Glycine max RepID=G3E7M4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001D62D03 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001D62D03 related cluster n=1 Tax=unknown RepID=UPI0001D62D03 | SoyBase | E_val: 0 | ISS |
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Glyma11g08350 not represented in the dataset |
Glyma11g08350 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g36890 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g078700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g08350.1 sequence type=CDS gene model=Glyma11g08350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCACTGCCACCAATTTCTCTCTTTCTCTCTGCGCCAACCAACAAACTCCAATCCCCAAACCCTCTTTCTTCTCCAATAACAACCATTTGCACTTCAACTCTAATAATAATTGGGCCTGGGCCTCTGTTTCCACCTCTCGCAAGTCAAGGATATGCGCCACCTCCTCTCAAGTTATGGATCCCTCCGCAGCAAAATCCGAACCCGCTCTTCCCACCATCGTCGAAGTCGATTTGGGTAGCCGGAGCTATCCTATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGGCATGTGCATGGAAAGAGAGTCCTAGTTGTAACTAACGAAACCGTTGCGCCACTTTATCTAGACAAGGTTGTTGATGCTTTGACAAGGGGAAACCCGAATGTTTCTGTGGAGAGTGTAATTTTACCTGATGGTGAGCAGTACAAGGACATGGATACTCTTATGAAAGTCTTTGACAAGGCCATCGAGTCGCGGCTCGACCGGCGGTGTACGTTTGTTGCTCTTGGTGGTGGTGTGATTGGCGACATGTGTGGCTTTGCTGCCTCTGCCTTCCTACGTGGTGTTAATTTTATTCAGATTCCTACAACTGTGATGGCACAGGTCGATTCTTCAGTTGGTGGAAAAACTGGGATAAATCACCGCCTTGGGAAGAACATGATCGGTACCTTTTACCAACCTCAGTGTGTGCTTATAGACACAGACACATTAAATACGCTACCGGATAGGGAACTGGCATCAGGGCTAGCAGAGGTTATAAAGTATGGGCTCATTAGGGATGCAGAGTTTTTTGAGTGGCAAGAGAAAAATATGCACTTATTATTGGCAAGAGATCCTAGTGTAATGGCATATGCTATAAAGCGATCTTGTGAAAACAAGGCTGAGGTTGTGTCCTTAGATGAGAAGGAAAGTGGACTGAGGGCAACATTGAACTTGGGTCATACATTTGGTCATGCAATAGAAACTGGGGTAGGCTATGGGCAGTGGCTTCATGGAGAGGCTGTTGCAGCTGGCACGGTAATGGCTGTTGACATGTCATATCGCCTAGGTTGGATTGATGATTCTCTTGTGAAACGAGTTGGAGACATTTTAAAACAGGCTAAGTTACCCACAGCCCCTCCTGAGACCGTGACTGTGGACATGTTTAAATCTGTCATGGCAGTGGATAAGAAGGTAGCAGATGGGTTGCTAAGGCTTATCCTTCTAAAGGGTCCTCTAGGCAATTGTGTTTTCACAGGGGATTATGACAGAAAGGCTCTAGACAATACGCTTCGTGCATTCTGTAAATCCTGA
>Glyma11g08350.1 sequence type=predicted peptide gene model=Glyma11g08350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASTATNFSLSLCANQQTPIPKPSFFSNNNHLHFNSNNNWAWASVSTSRKSRICATSSQVMDPSAAKSEPALPTIVEVDLGSRSYPIYIGSGLLNQPDYLQRHVHGKRVLVVTNETVAPLYLDKVVDALTRGNPNVSVESVILPDGEQYKDMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGFAASAFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNMIGTFYQPQCVLIDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEKNMHLLLARDPSVMAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGVGYGQWLHGEAVAAGTVMAVDMSYRLGWIDDSLVKRVGDILKQAKLPTAPPETVTVDMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDNTLRAFCKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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