Glyma11g08310 - SoyBase

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Report for Sequence Feature Glyma11g08310

Feature Type:	gene_model
Chromosome:	Gm11
Start:	5890482
stop:	5898263
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g08310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G17820	AT	Annotation by Michelle Graham. TAIR10: histidine kinase 1 \| chr2:7743133-7748013 REVERSE LENGTH=1207	SoyBase	E_val: 0	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0010375	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex patterning	SoyBase	N/A	ISS
GO:0010431	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed maturation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000155	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay sensor kinase activity	SoyBase	N/A	ISS
GO:0000156	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity	SoyBase	N/A	ISS
GO:0004673	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase activity	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
GO:0005034	GO-mf	Annotation by Michelle Graham. GO Molecular Function: osmosensor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0009927	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histidine phosphotransfer kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0519	KOG	Sensory transduction histidine kinase	JGI		ISS
PTHR24423	Panther	TWO COMPONENT SIGNAL TRANSDUCTION PROTEIN-RELATED	JGI		ISS
PF00072	PFAM	Response regulator receiver domain	JGI		ISS
PF00512	PFAM	His Kinase A (phosphoacceptor) domain	JGI		ISS
PF02518	PFAM	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	JGI		ISS
UniRef100_G7JXI9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histidine kinase osmosensor protein n=1 Tax=Medicago truncatula RepID=G7JXI9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LI26	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LI26_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma11g08310

Locus	Gene Symbol	Protein Name
	HK08	Root preferential, Histidine Kinase

Expression Patterns of Glyma11g08310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g08310 not represented in the dataset	Glyma11g08310 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g08310

Paralog	Evidence	Comments
Glyma01g36950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g08310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g078300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g08310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g08310

Limit To All Plant Sequences

>Glyma11g08310.1   sequence type=CDS   gene model=Glyma11g08310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAAAACAAAGACGAAATCTATTCTGAATGTTCACCAGGCTCAAACTCTCCAATGGGTAGCAAGTGCAGATACTTGTTTCATAGATTATGCGGTTGTGACACTTCATGGAACAAAAACAGCACCCCAAAGAGTCGAAGAATTTTCCACAGAGATGTGGAAAAAGAAGAATTCCAGTATGCTAGTAGTCACTGTCTCTCATCCTACTACAGTGTCTTTGTGGTTCGACTAGCAATCATGGTGATGCTAGCCATCTTGATAGGGTTGCTCACTATACTGACATGGCATTTCACCAAGATTTATACAGCAAAATCACTTCGCAGCTTGGCATATGGTTTGCGTTATGAACTTCTGCAACGCCCCGTTTTGAGGATGTGGAATATTTTAAACTCTACTTCTGAAATCACTACAGCTCAGGTCAAACTGTCTCAGTATGTGATCAGACGTCACAGCAACCCTGCGACTCAAGCAGAGCAAGTTGAGCTGTATGAAGCGATGAGGGCTGTAACATGGGCGTTATTTGCTAGTCGAAAAGCTCTAAACTCTATAACTATCAATTATAAGAATGGATTTGTTCAAGCGTTCCACAGAGATCTTAAGGACAACAACACATTTTACATCTATTCTGATCTTTCAAATTACTCCATGGGTGCTAGCAACTCTAATGAGGTCAATTCCATTTCAAAGCACCGAGCTTGGGATGATAAAGGCCTTCATGGTAACTATTCTTCAATCTGGTACCGAGAACCACTTGACCCTGTGAGTGGTGAAAAGATTGGAAAAGCTATGAAAATTGCACCTGAAGACTTGATCAACATCGCTGGACTTTCCCAAGTGCCTGACGGTGTAGCTTCGTGGCATGTCGCAGTGAGCAAGTTCACAGATTCACCATTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCTAATAAGACTATTATGGCGGTTGTGGGGGTCACAACTGCACTTTATAGTGTAGGACAGCTAATGAGAGAGCTAGTTGAGATGCACAGTGGCCATATGTATTTGACATCTCAAGAGGGTTACTTACTTGCAACTTCCACAAGTGCACCTCTACTGGAAACTTCAACAAAGCCTCCTAAGCTTAAGATGGCTGTTGACTGTGAAGACAACGTAATTCGACTGGGAGCTGAGTGGTTACAGAGAACTTATGGGAACAATTTTCCTCCAAGTCATGAGATTCATGTAGAGAATGTCAAGCTAGGTCACCAGAGATATTACATTGACTCATTCTTCCTAAATTTAAAGAGACTTCCTTTGGTAGGTGTGATCATCATACCAAGAAAGTATATCATGGGGCAGGTAGATGAAAGAGCCTACAAAACGTTGGTTATTCTGATATCTGCATCATTATGTATTTTAGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTGATAAATCAACTGGAAGCAAGAAGAAAAGCAGAGGCATCAAGCAACTATAAAAGTCAATTCCTTGCAAACATGAGTCATGAACTGAGGACACCTATGGCAGCAGTAATTGGGTTGCTTGACATTCTCATATCAGATGACTGTCTCACAAATGAACAATATTCAACAGTTACTCAAATAAGAAAATGTTCAACTGCTCTGCTCCGTCTTCTTAATAACATCTTGGATCTGAGTAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTAGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTTCAGTGCATGAACCACAATGTGGAGACTGTTTTAGACCTGTCTGATGATATGCCAAAGGTAGTCCGTGGAGATTCTGCGAGAGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTTACTCCATCGGGTCATATTATTCTGCGAGGATGGTGTGAAAACCAAAATTCTTACGTTGGTAGTCCTCTTGACCAGAAGAAATCTCGGAGTTTACAAAAGTGCATAGAGAGGCCAAATGCAAACCATGCAAAGAGAACTTCTGTGAAAGATAACAAAGTGATACTTTGGTTTGAAGTTGACGACACAGGCTGTGGTATTGACCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAGGCTGATCCATCAACTACACGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTGAGAAACTTGGTTAACAAGATGGGTGGAGACATCAGGGTTGTCAAAAAGGAGGGCTCAGGAACACTAATGCGATTATGCTTGCTTCTCAGTGCGCCAATGGATGTCACAGAACAACAGTGTGCAGTAGATTTGACAGACAATGGCTTAGTGGTACTGCTTGCTCTGCATGGCAACATGGGTCGATTAATTACATCCAAGTGGCTACAGAAAAACGGGGTGTGCACAATGGAAGCATCTGACTGGAACGGACTAACTCAAATTTTGAGGGAACTCTTTCATGCAGGAAGTTCAGTTCATAATACTGACTTTGAGGCACACTATCCAGCAAAAGAGGAATTGAAGTCTAAACTACTCAACATAAGAGATATGAGGAACCCGGGTTTTGTCATTGTTGTTGACATTGGACTACTTGACTTGAGTACAGATATATGGAAGGAACAGTTTAACTTCCTCCACAGGTACTTTGGTAGAGCAAAGTTTGTATGGATGTTAAACCATGACACTTCCAATACCATAAAAATGGAGCTCCGTAGGAAAGGGCATATACTTATGGTTAACAAACCCCTTTACAAAGCAAAAATGATTCATATCTTGGAAGCTGTCATAAATGAGAGAAATCTTGAGCTACAAAAGAAAAACATGATAGCTCCAAGGACCACAATGAAAGAGGGTGATTTGCATGAGTTTCTTGAGATTGATTCCACTCATTTTGATGGTGCTAGCTCTGATGATTCTGACATATCAGAAATAAGTGGTTCTAATCCCGTTAGTGCTAATGGAGATAAACCAGTTGAGAAGCTAGAAAACTCTCATCCATCATCACCACACCATATGAATAACTGCCTAGTTAGATTAACAAATGAAAATGAATGTTTGGAAGAACATAATTTGAGGAAAGAAGAATCTTCTAGTCCCAGCTCCAGTTCTGCCACTGAAGACAACCAACCTAAATCACTATCCACCAAAGAATCATCATCCATTTCAACAGAAGATCAGGATGAAGATTCTGAATGTGGGGACACAAATAGGGTCACCAGCTCAAGTAAAGCAGTAGTAGATGGAAAGAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCAGTACTTCAAAGGGTTGCTACCATAATGCTTGAAAAAATGGGAGCAGATGTTGTTGCTGTAGGTGATGGACAACAGGCAGTAGATGCTCTCAATTGCATGTTCACTGCTGAAGACTGTAGAAGAGAATCACTCCAGAAGGAAAGAAACACAAGATCTCAAACAGAGATTTCGACTTGCCGTCCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCAGGAAATCAGAAGTGGGAACAAGCAGGCACATTCCCATTGTTGCTCTTACAGCACATGCAATGTCATGTGATGAAGCCAAATGCCTGGAGGTGGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAAATGATGGTGTCCACCATTCTTTCACTCACTAAAAGAACATCTTGA

Predicted protein sequences of Glyma11g08310

Limit To All Plant Sequences

>Glyma11g08310.1   sequence type=predicted peptide   gene model=Glyma11g08310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAENKDEIYSECSPGSNSPMGSKCRYLFHRLCGCDTSWNKNSTPKSRRIFHRDVEKEEFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLRSLAYGLRYELLQRPVLRMWNILNSTSEITTAQVKLSQYVIRRHSNPATQAEQVELYEAMRAVTWALFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMGASNSNEVNSISKHRAWDDKGLHGNYSSIWYREPLDPVSGEKIGKAMKIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKTIMAVVGVTTALYSVGQLMRELVEMHSGHMYLTSQEGYLLATSTSAPLLETSTKPPKLKMAVDCEDNVIRLGAEWLQRTYGNNFPPSHEIHVENVKLGHQRYYIDSFFLNLKRLPLVGVIIIPRKYIMGQVDERAYKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELINQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCMNHNVETVLDLSDDMPKVVRGDSARVVQIFANLINNSIKFTPSGHIILRGWCENQNSYVGSPLDQKKSRSLQKCIERPNANHAKRTSVKDNKVILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGDIRVVKKEGSGTLMRLCLLLSAPMDVTEQQCAVDLTDNGLVVLLALHGNMGRLITSKWLQKNGVCTMEASDWNGLTQILRELFHAGSSVHNTDFEAHYPAKEELKSKLLNIRDMRNPGFVIVVDIGLLDLSTDIWKEQFNFLHRYFGRAKFVWMLNHDTSNTIKMELRRKGHILMVNKPLYKAKMIHILEAVINERNLELQKKNMIAPRTTMKEGDLHEFLEIDSTHFDGASSDDSDISEISGSNPVSANGDKPVEKLENSHPSSPHHMNNCLVRLTNENECLEEHNLRKEESSSPSSSSATEDNQPKSLSTKESSSISTEDQDEDSECGDTNRVTSSSKAVVDGKKSLEGLKILLAEDTPVLQRVATIMLEKMGADVVAVGDGQQAVDALNCMFTAEDCRRESLQKERNTRSQTEISTCRPYDLILMDCQMPKMDGYEATKAIRKSEVGTSRHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKMMVSTILSLTKRTS*

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