SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G18060 | AT | Annotation by Michelle Graham. TAIR10: vascular related NAC-domain protein 1 | chr2:7848399-7850303 REVERSE LENGTH=365 | SoyBase | E_val: 9.00E-160 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009741 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus | SoyBase | N/A | ISS |
| GO:0010089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem development | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PF02365 | PFAM | No apical meristem (NAM) protein | JGI | ISS | |
| UniRef100_E5KUH9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Populus trichocarpa RepID=E5KUH9_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LI01 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LI01_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g07990 not represented in the dataset |
Glyma11g07990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g37310 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g075400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g07990.3 sequence type=transcript gene model=Glyma11g07990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTCTCTCTCTCTCTCTCCATCATCATTCATGTTGTTTTCTTCTACCAAGCTAGCCTAGCTTCTTCATCTCCTTCAATTTGTCTTCTCTTCATTAATTCCAATTGTCTTTAAACCGCTATCTCATCAGCATGATGAAGAAAGTCAAGTGTGGTGGGTATTAATGGTGGTGGTGAATTTGATGCAGTACCAGTAATTGCTATCATGGAGTCGATGGAGTCATGTGTCCCACCAGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTATTATCTCAGGAAGAAAGTCGCTTCTCAGAAAATTGACCTTGATGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGAGAGATGCAGGATAGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAAAAGTATCCAACAGGGACAAGAACTAATAGAGCTACCATGGCTGGGTTTTGGAAGGCGACAGGAAGAGACAAAGCAGTGTATGAAAGAGCAAAACTTATTGGGATGAGGAAGACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAAGTGATTGGATCATGCACGAGTATAGGCTTGAATCTGATGAGAATGGACCTCCACAGGAGGAAGGTTGGGTTGTGTGCAGAGCCTTCAAGAAGAAAACCACTGGGCAAACGAAGACTATAAATATTGAAGGATGGGAGTCAAGCTACTTCTATGACGAAGCAAGTGGGGCAACAAGCACTTTGGTCGATCCAATTGAACTCATTTCAAGGCAATCTCAGAGCTTTCTGGCTCAAAATTTCATGTGCAAGCAAGAGCTAGAAGCAGATAACTTGACTTGCATGCATCAAGATCCGTTTGTGCAACTTCCTCAGCTAGAAAGCCCGTCTTTGCCACTAGTAAAGAAGCCAAGCACAGTGTCCCTAGTATCAGACAATAATAACGAAGGTGAAGACAATCAAAACAGGTTGTTATTCAACAACAACAACACAAAGAAAGTCACTACTGATTGGAGAGCCCTTGACAAGTTTGTAGCCTCTCAACTAAGTCAAGAAGTAAACACGCATGAAACTAATGTTGGAGTACTCTCATCAAGCTTTGAACCCCATGATGATAACCACGACATGGCACTGCTGCTACTGCAGAGTAGTAGGGATGAAGGGAACAGGTTAAGCCCGTTTCTAAATACAAGCTCCGACTGTGACAATGGGATATGCGTATTCGAAAAATGATCCAAGAAGAAAAAGAAGTGCGTGGAAACGATTTTTAATTATTTGTAGTAGTACCATGTGTTAAATTAATGTTCTATGGATGCTGGGACAAAGACATACTATATTTTTGTAAAAAAAAAATATGTGTGGATCAGAAGAATTAAAACTCTCTATATATGCCCTTCTGCGTGAGTGAAGCATGTGTGCGCAAATTGAGATGCATGCGTCCAAGTGGCTCTAGAATTTAGGTAGTTTTTTATATATATTTTAAGTTATCACGATAAGCAGAAGGTACAGTAATAGCCTTGCCATAAAACGAGTCTTCTAGGCTCTCATGCCTAAGAAGGCAGGTGTGACAGCATATGTTTGTGATCCTTCAGAATTCTGCTGCTATTTTAAAATGCCTGTGTATTCTTTAATTTTCTCTGCTTAAGCATGTTGTACAATTGTTCTGCATTGATCTTTATGTCACGTGCATGCACAGCATA >Glyma11g07990.4 sequence type=transcript gene model=Glyma11g07990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTCTTTCCACAATTCACCAAATACAAGGTACCAGTAATTGCTATCATGGAGTCGATGGAGTCATGTGTCCCACCAGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTATTATCTCAGGAAGAAAGTCGCTTCTCAGAAAATTGACCTTGATGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGAGAGATGCAGGATAGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAAAAGTATCCAACAGGGACAAGAACTAATAGAGCTACCATGGCTGGGTTTTGGAAGGCGACAGGAAGAGACAAAGCAGTGTATGAAAGAGCAAAACTTATTGGGATGAGGAAGACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAAGTGATTGGATCATGCACGAGTATAGGCTTGAATCTGATGAGAATGGACCTCCACAGGAGGAAGGTTGGGTTGTGTGCAGAGCCTTCAAGAAGAAAACCACTGGGCAAACGAAGACTATAAATATTGAAGGATGGGAGTCAAGCTACTTCTATGACGAAGCAAGTGGGGCAACAAGCACTTTGGTCGATCCAATTGAACTCATTTCAAGGCAATCTCAGAGCTTTCTGGCTCAAAATTTCATGTGCAAGCAAGAGCTAGAAGCAGATAACTTGACTTGCATGCATCAAGATCCGTTTGTGCAACTTCCTCAGCTAGAAAGCCCGTCTTTGCCACTAGTAAAGAAGCCAAGCACAGTGTCCCTAGTATCAGACAATAATAACGAAGGTGAAGACAATCAAAACAGGTTGTTATTCAACAACAACAACACAAAGAAAGTCACTACTGATTGGAGAGCCCTTGACAAGTTTGTAGCCTCTCAACTAAGTCAAGAAGTAAACACGCATGAAACTAATGTTGGAGTACTCTCATCAAGCTTTGAACCCCATGATGATAACCACGACATGGCACTGCTGCTACTGCAGAGTAGTAGGGATGAAGGGAACAGGTTAAGCCCGTTTCTAAATACAAGCTCCGACTGTGACAATGGGATATGCGTATTCGAAAAATGATCCAAGAAGAAAAAGAAGTGCGTGGAAACGATTTTTAATTATTTGTAGTAGTACCATGTGTTAAATTAATGTTCTATGGATGCTGGGACAAAGACATACTATATTTTTGTAAAAAAAAAATATGTGTGGATCAGAAGAATTAAAACTCTCTATATATGCCCTTCTGCGTGAGTGAAGCATGTGTGCGCAAATTGAGATGCATGCGTCCAAGTGGCTCTAGAATTTAGGTAGTTTTTTATATATATTTTAAGTTATCACGATAAGCAGAAGGTACAGTAATAGCCTTGCCATAAAACGAGTCTTCTAGGCTCTCATGCCTAAGAAGGCAGGTGTGACAGCATATGTTTGTGATCCTTCAGAATTCTGCTGCTATTTTAAAATGCCTGTGTATTCTTTAATTTTCTCTGCTTAAGCATGTTGTACAATTGTTCTGCATTGATCTTTATGTCACGTGCATGCACAGCATA
>Glyma11g07990.2 sequence type=CDS gene model=Glyma11g07990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCGATGGAGTCATGTGTCCCACCAGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTATTATCTCAGGAAGAAAGTCGCTTCTCAGAAAATTGACCTTGATGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGAGAGATGCAGGATAGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAAAAGTATCCAACAGGGACAAGAACTAATAGAGCTACCATGGCTGGGTTTTGGAAGGCGACAGGAAGAGACAAAGCAGTGTATGAAAGAGCAAAACTTATTGGGATGAGGAAGACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAAGTGATTGGATCATGCACGAGTATAGGCTTGAATCTGATGAGAATGGACCTCCACAGGAGGAAGGTTGGGTTGTGTGCAGAGCCTTCAAGAAGAAAACCACTGGGCAAACGAAGACTATAAATATTGAAGGATGGGAGTCAAGCTACTTCTATGACGAAGCAAGTGGGGCAACAAGCACTTTGGTCGATCCAATTGAACTCATTTCAAGGCAATCTCAGAGCTTTCTGGCTCAAAATTTCATGTGCAAGCAAGAGCTAGAAGCAGATAACTTGACTTGCATGCATCAAGATCCGTTTGTGCAACTTCCTCAGCTAGAAAGCCCGTCTTTGCCACTAGTAAAGAAGCCAAGCACAGTGTCCCTAGTATCAGACAATAATAACGAAGGTGAAGACAATCAAAACAGGTTGTTATTCAACAACAACAACACAAAGAAAGTCACTACTGATTGGAGAGCCCTTGACAAGTTTGTAGCCTCTCAACTAAGTCAAGAAGTAAACACGCATGAAACTAATGTTGGAGTACTCTCATCAAGCTTTGAACCCCATGATGATAACCACGACATGGCACTGCTGCTACTGCAGAGTAGTAGGGATGAAGGGAACAGGTTAAGCCCGTTTCTAAATACAAGCTCCGACTGTGACAATGGGATATGCGTATTCGAAAAATGA >Glyma11g07990.3 sequence type=CDS gene model=Glyma11g07990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCGATGGAGTCATGTGTCCCACCAGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTATTATCTCAGGAAGAAAGTCGCTTCTCAGAAAATTGACCTTGATGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGAGAGATGCAGGATAGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAAAAGTATCCAACAGGGACAAGAACTAATAGAGCTACCATGGCTGGGTTTTGGAAGGCGACAGGAAGAGACAAAGCAGTGTATGAAAGAGCAAAACTTATTGGGATGAGGAAGACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAAGTGATTGGATCATGCACGAGTATAGGCTTGAATCTGATGAGAATGGACCTCCACAGGAGGAAGGTTGGGTTGTGTGCAGAGCCTTCAAGAAGAAAACCACTGGGCAAACGAAGACTATAAATATTGAAGGATGGGAGTCAAGCTACTTCTATGACGAAGCAAGTGGGGCAACAAGCACTTTGGTCGATCCAATTGAACTCATTTCAAGGCAATCTCAGAGCTTTCTGGCTCAAAATTTCATGTGCAAGCAAGAGCTAGAAGCAGATAACTTGACTTGCATGCATCAAGATCCGTTTGTGCAACTTCCTCAGCTAGAAAGCCCGTCTTTGCCACTAGTAAAGAAGCCAAGCACAGTGTCCCTAGTATCAGACAATAATAACGAAGGTGAAGACAATCAAAACAGGTTGTTATTCAACAACAACAACACAAAGAAAGTCACTACTGATTGGAGAGCCCTTGACAAGTTTGTAGCCTCTCAACTAAGTCAAGAAGTAAACACGCATGAAACTAATGTTGGAGTACTCTCATCAAGCTTTGAACCCCATGATGATAACCACGACATGGCACTGCTGCTACTGCAGAGTAGTAGGGATGAAGGGAACAGGTTAAGCCCGTTTCTAAATACAAGCTCCGACTGTGACAATGGGATATGCGTATTCGAAAAATGA >Glyma11g07990.4 sequence type=CDS gene model=Glyma11g07990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCGATGGAGTCATGTGTCCCACCAGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTATTATCTCAGGAAGAAAGTCGCTTCTCAGAAAATTGACCTTGATGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGAGAGATGCAGGATAGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAAAAGTATCCAACAGGGACAAGAACTAATAGAGCTACCATGGCTGGGTTTTGGAAGGCGACAGGAAGAGACAAAGCAGTGTATGAAAGAGCAAAACTTATTGGGATGAGGAAGACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAAGTGATTGGATCATGCACGAGTATAGGCTTGAATCTGATGAGAATGGACCTCCACAGGAGGAAGGTTGGGTTGTGTGCAGAGCCTTCAAGAAGAAAACCACTGGGCAAACGAAGACTATAAATATTGAAGGATGGGAGTCAAGCTACTTCTATGACGAAGCAAGTGGGGCAACAAGCACTTTGGTCGATCCAATTGAACTCATTTCAAGGCAATCTCAGAGCTTTCTGGCTCAAAATTTCATGTGCAAGCAAGAGCTAGAAGCAGATAACTTGACTTGCATGCATCAAGATCCGTTTGTGCAACTTCCTCAGCTAGAAAGCCCGTCTTTGCCACTAGTAAAGAAGCCAAGCACAGTGTCCCTAGTATCAGACAATAATAACGAAGGTGAAGACAATCAAAACAGGTTGTTATTCAACAACAACAACACAAAGAAAGTCACTACTGATTGGAGAGCCCTTGACAAGTTTGTAGCCTCTCAACTAAGTCAAGAAGTAAACACGCATGAAACTAATGTTGGAGTACTCTCATCAAGCTTTGAACCCCATGATGATAACCACGACATGGCACTGCTGCTACTGCAGAGTAGTAGGGATGAAGGGAACAGGTTAAGCCCGTTTCTAAATACAAGCTCCGACTGTGACAATGGGATATGCGTATTCGAAAAATGA
>Glyma11g07990.2 sequence type=predicted peptide gene model=Glyma11g07990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYERAKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTTGQTKTINIEGWESSYFYDEASGATSTLVDPIELISRQSQSFLAQNFMCKQELEADNLTCMHQDPFVQLPQLESPSLPLVKKPSTVSLVSDNNNEGEDNQNRLLFNNNNTKKVTTDWRALDKFVASQLSQEVNTHETNVGVLSSSFEPHDDNHDMALLLLQSSRDEGNRLSPFLNTSSDCDNGICVFEK* >Glyma11g07990.3 sequence type=predicted peptide gene model=Glyma11g07990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYERAKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTTGQTKTINIEGWESSYFYDEASGATSTLVDPIELISRQSQSFLAQNFMCKQELEADNLTCMHQDPFVQLPQLESPSLPLVKKPSTVSLVSDNNNEGEDNQNRLLFNNNNTKKVTTDWRALDKFVASQLSQEVNTHETNVGVLSSSFEPHDDNHDMALLLLQSSRDEGNRLSPFLNTSSDCDNGICVFEK* >Glyma11g07990.4 sequence type=predicted peptide gene model=Glyma11g07990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYERAKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTTGQTKTINIEGWESSYFYDEASGATSTLVDPIELISRQSQSFLAQNFMCKQELEADNLTCMHQDPFVQLPQLESPSLPLVKKPSTVSLVSDNNNEGEDNQNRLLFNNNNTKKVTTDWRALDKFVASQLSQEVNTHETNVGVLSSSFEPHDDNHDMALLLLQSSRDEGNRLSPFLNTSSDCDNGICVFEK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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