Glyma11g07930 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma11g07930): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma11g07930): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma11g07930

Feature Type:	gene_model
Chromosome:	Gm11
Start:	5584004
stop:	5587577
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g07930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38960	AT	Annotation by Michelle Graham. TAIR10: B-box type zinc finger family protein \| chr4:18161576-18163045 FORWARD LENGTH=183	SoyBase	E_val: 4.00E-73	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009411	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF00643	PFAM	B-box zinc finger	JGI		ISS
UniRef100_G7KGE4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein CONSTANS-like protein n=1 Tax=Medicago truncatula RepID=G7KGE4_MEDTR	SoyBase	E_val: 1.00E-116	ISS
UniRef100_I1LHZ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHZ2_SOYBN	SoyBase	E_val: 4.00E-142	ISS

Expression Patterns of Glyma11g07930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g07930 not represented in the dataset	Glyma11g07930 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g07930

Paralog	Evidence	Comments
Glyma01g37370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g07930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g074900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g07930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g07930

Limit To All Plant Sequences

>Glyma11g07930.2   sequence type=transcript   gene model=Glyma11g07930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAATGGTTAGGCTTAGGAAGGATGTGGGACCCATGTCAAATAATTAATTGGTGGTTGAGAATGAGGCTTGAGTTGCTGTCAACCCCACATTGGCTTTGAACTTGTGGCTACGAAGTAACGTTTGAAGCCAACAGAGTTGACAAACACTCATTTATTGTGTCTATGCAAAGTTCTGGAATCAACCCCCAAACAAGGTCCCCCCACTCCTTCAAAAATCCTCTCTTTTTATCCTACACTCTAATCATAGTCATCATCCACCACCTCCATCTTCCCCCAGTAACAACATAACATAACATTCAGAGAAAAACAAAACTATCATACCCACATGGATTTGCAATGAAAGTGAGAGAGTCCAATTATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCGGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCACTTTGTCGTGCCTGTGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTAGGCATGTGAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCACCAGCTTTCTTCTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATTGTTCATGTTGGTGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGATAAATCTAGTCATGCTGAAAATCCGGCTTCACAAGCATTGGAACCAGGTGAGGCTAAAAGAGGACAAAATCCACTTCCCAAGCTAAAAATGGGAGAGAAACAACAAAATCACAGGATGCCTATGGTTCCAACACCAGGACCTGATGCTGATGGGCAAACCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAATAGAATACATGAACAAGCATCAAATAACCAGCCATAAATGGTGCAACTAGGCAATGCAGTTCTGACAGGATCCTAAACCAAAAATCTACCAATGGCAAAAGCTTCGTTTTGTTCTCATGCATGCTAGTCACAAGGGATGACATACTCTGTTAATATCCTATATATTCTGGCAAATGAGGCACTAAAATCTTTTGAGGAGTTTATTCGTCTATGTAGGAATTTAATTTGGTAGTTCAACACATCATATTCTGTACTGCAAAGCATTGTTAACTGTATATCTATGACCCCTTTCAATGAATTGTGTGTTGACTTTTGTTTCTGGTTTCAGTTTTGTATGCCATTACGTCCCCTAGAAAATTCTGGGGGAAAATAGTTATTTGATTTCTTAAAAATAAAATGCGACAATTAGCGAGCCAACCCACATCTGATGGTTGAAATTATTGCATCTTTGAGGTGTAGAGTTATATGTGATAGTATCTGC

>Glyma11g07930.3   sequence type=transcript   gene model=Glyma11g07930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACTTTCTTTTGTATTTGTTGGATGAAGCAATGAAAGTGAGAGAGTCCAATTATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCGGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCACTTTGTCGTGCCTGTGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTAGGCATGTGAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCACCAGCTTTCTTCTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATTGTTCATGTTGGTGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGATAAATCTAGTCATGCTGAAAATCCGGCTTCACAAGCATTGGAACCAGGTGAGGCTAAAAGAGGACAAAATCCACTTCCCAAGCTAAAAATGGGAGAGAAACAACAAAATCACAGGATGCCTATGGTTCCAACACCAGGACCTGATGCTGATGGGCAAACCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAATAGAATACATGAACAAGCATCAAATAACCAGCCATAAATGGTGCAACTAGGCAATGCAGTTCTGACAGGATCCTAAACCAAAAATCTACCAATGGCAAAAGCTTCGTTTTGTTCTCATGCATGCTAGTCACAAGGGATGACATACTCTGTTAATATCCTATATATTCTGGCAAATGAGGCACTAAAATCTTTTGAGGAGTTTATTCGTCTATGTAGGAATTTAATTTGGTAGTTCAACACATCATATTCTGTACTGCAAAGCATTGTTAACTGTATATCTATGACCCCTTTCAATGAATTGTGTGTTGACTTTTGTTTCTGGTTTCAGTTTTGTATGCCATTACGTCCCCTAGAAAATTCTGGGGGAAAATAGTTATTTGATTTCTTAAAAATAAAATGCGACAATTAGCGAGCCAA

>Glyma11g07930.4   sequence type=transcript   gene model=Glyma11g07930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACTTTCTTTTGTATTTGTTGGATGAAGCAATGAAAGTGAGAGAGTCCAATTATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCGGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCACTTTGTCGTGCCTGTGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTAGGCATGTGAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCACCAGCTTTCTTCTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATTGTTCATGTTGGTGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGATAAATCTAGTCATGCTGAAAATCCGGCTTCACAAGCATTGGAACCAGGTGAGGCTAAAAGAGGACAAAATCCACTTCCCAAGCTAAAAATGGGAGAGAAACAACAAAATCACAGGATGCCTATGGTTCCAACACCAGGACCTGATGCTGATGGGCAAACCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAATAGAATACATGAACAAGCATCAAATAACCAGGTTAGAGTTCATGGGAAGTAAACTTTGTCTGCCTAGTTAGAAATTTCTTTTCTGGTAAAGGTTTGTTTCACATAAGTGGGATTATGCAAGGAAAATCATGAGCATACACCCCCAAAATGGAGTGTATGTATGAAAAGAAGAGAGAGAGAAAAAAAAATAGATATGATAAAATTATGTCATTGATGTGATGGGAAATAAAAGAAAGAGATAATAAAAAAATGGGATGAAAGTAAGATGCAATAATAATAATAACCCCATACTGCAAATATTTGCAAACTGAAAATATGAACCCTATTACTACAAGTCCATCTCATTTAAATATGGATCACTTCTTCTTAGTGGTGTTAAATTCATCCTTGGTGCATTAAATATATAGACTTGTCCAAATAGTTTTGATTGGGATATGGGACTCATTGAAACGTCATGTGATGTGA

Coding sequences of Glyma11g07930

Limit To All Plant Sequences

>Glyma11g07930.1   sequence type=CDS   gene model=Glyma11g07930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCGGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCACTTTGTCGTGCCTGTGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTAGGCATGTGAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCACCAGCTTTCTTCTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATTGTTCATGTTGGTGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGATAAATCTAGTCATGCTGAAAATCCGGCTTCACAAGCATTGGAACCAGGTGAGGCTAAAAGAGGACAAAATCCACTTCCCAAGCTAAAAATGGGAGAGAAACAACAAAATCACAGGATGCCTATGGTTCCAACACCAGGACCTGATGCTGATGGGCAAACCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAATAGAATACATGAACAAGCATCAAATAACCAGTGCAGTTGGATGAAAGTAGAACCCTTTCCATAA

>Glyma11g07930.2   sequence type=CDS   gene model=Glyma11g07930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCGGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCACTTTGTCGTGCCTGTGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTAGGCATGTGAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCACCAGCTTTCTTCTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATTGTTCATGTTGGTGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGATAAATCTAGTCATGCTGAAAATCCGGCTTCACAAGCATTGGAACCAGGTGAGGCTAAAAGAGGACAAAATCCACTTCCCAAGCTAAAAATGGGAGAGAAACAACAAAATCACAGGATGCCTATGGTTCCAACACCAGGACCTGATGCTGATGGGCAAACCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAATAGAATACATGAACAAGCATCAAATAACCAGCCATAA

>Glyma11g07930.3   sequence type=CDS   gene model=Glyma11g07930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCGGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCACTTTGTCGTGCCTGTGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTAGGCATGTGAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCACCAGCTTTCTTCTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATTGTTCATGTTGGTGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGATAAATCTAGTCATGCTGAAAATCCGGCTTCACAAGCATTGGAACCAGGTGAGGCTAAAAGAGGACAAAATCCACTTCCCAAGCTAAAAATGGGAGAGAAACAACAAAATCACAGGATGCCTATGGTTCCAACACCAGGACCTGATGCTGATGGGCAAACCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAATAGAATACATGAACAAGCATCAAATAACCAGCCATAA

>Glyma11g07930.4   sequence type=CDS   gene model=Glyma11g07930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCGGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCACTTTGTCGTGCCTGTGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTAGGCATGTGAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCACCAGCTTTCTTCTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATTGTTCATGTTGGTGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGATAAATCTAGTCATGCTGAAAATCCGGCTTCACAAGCATTGGAACCAGGTGAGGCTAAAAGAGGACAAAATCCACTTCCCAAGCTAAAAATGGGAGAGAAACAACAAAATCACAGGATGCCTATGGTTCCAACACCAGGACCTGATGCTGATGGGCAAACCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAATAGAATACATGAACAAGCATCAAATAACCAGGTTAGAGTTCATGGGAAGTAA

Predicted protein sequences of Glyma11g07930

Limit To All Plant Sequences

>Glyma11g07930.1   sequence type=predicted peptide   gene model=Glyma11g07930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAENPASQALEPGEAKRGQNPLPKLKMGEKQQNHRMPMVPTPGPDADGQTKMETKMIDLNMKPNRIHEQASNNQCSWMKVEPFP*

>Glyma11g07930.2   sequence type=predicted peptide   gene model=Glyma11g07930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAENPASQALEPGEAKRGQNPLPKLKMGEKQQNHRMPMVPTPGPDADGQTKMETKMIDLNMKPNRIHEQASNNQP*

>Glyma11g07930.3   sequence type=predicted peptide   gene model=Glyma11g07930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAENPASQALEPGEAKRGQNPLPKLKMGEKQQNHRMPMVPTPGPDADGQTKMETKMIDLNMKPNRIHEQASNNQP*

>Glyma11g07930.4   sequence type=predicted peptide   gene model=Glyma11g07930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAENPASQALEPGEAKRGQNPLPKLKMGEKQQNHRMPMVPTPGPDADGQTKMETKMIDLNMKPNRIHEQASNNQVRVHGK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain