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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G51130 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0183 (InterPro:IPR005373); Has 269 Blast hits to 265 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 82; Plants - 37; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | chr3:18994219-18997180 FORWARD LENGTH=410 | SoyBase | E_val: 0 | ISS |
| GO:0006914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: autophagy | SoyBase | N/A | ISS |
| GO:0009610 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| KOG2819 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR13465 | Panther | UPF0183 PROTEIN | JGI | ISS | |
| PTHR13465:SF2 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF03676 | PFAM | Uncharacterised protein family (UPF0183) | JGI | ISS | |
| UniRef100_B4FSF3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: UPF0183 protein n=1 Tax=Zea mays RepID=B4FSF3_MAIZE | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LHZ0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHZ0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g07910 not represented in the dataset |
Glyma11g07910 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g37380 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g074800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g07910.4 sequence type=transcript gene model=Glyma11g07910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGGGTTTCCGTGGCGTGCGAGAGGGGCATCTTTGGCGACTGCGGTGTTGAAAAAGGAAACCGAAGGTGGTTTGTTTGTTTTTCCGTCTAATCAAAATCAAATCGAATTGGATTGGATACAATACAATACAACCCTATATAAGCCTTCAAAACCTGCGCTGCGTGCTGTCGTTTCATTTGCTTTACTCACCGAAAGTAACGGAGGGATTTCCTTAACCCACAAACTCTCAAATACCCTCTCTCTCTCACCGACCACTATGTTGCAGAGACCTAGACGCCGCTGCGAGGGCACTGCCATGGGCGCCATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCGGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAGAGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGGGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCCCACATATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCATGACGGGGGAGTGGAATTGCCATTGGAGTTTCCTGATGGGACCACGCCAGTTACATGCCGTGTTTCTATATATGATAGCTCCTCTGGTAAGAAGGTTGGTGTGGGGGCCTTAATGGACAAGGCTTCTGCTCCTCCATTACCTGCTGGCAGCATTTACATGGAAGAGGTCCATGTGAAGCTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAGGTAGATCAAATGGTTATTCATTCTGCTTCAGATCTTCGGCCACGGACAACTCTCTGTGGAGACTACTTTTATAATTATTTTACTCGTGGTCTGGACATATTATTTGATGGACAGACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCAAGTAACCCCTTTGGTTCTACTCTTGTATATGGTTATCAAAATATTGCCTTTGAGGTGATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATGGCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCAAGGTTGGATATGGAAATTCAGGAGTAACAGGCTAGGTTTGTACGAGCACTGTTTAAATATTGCAGCCTTCCATCATCATTATCGTGGCAAGGGGCTATGAAAATTGTACAGCTGTGTAACAAATTGTACATATTAAAATCCTGTTAAATTATGTAATTTTCTAACATTGACATCTTGCACAAAGCAAATGTAATGAATTCCTTTTGCTTTGCCTTTCAGTGTAATGAGATTCTTAGTTACTTGCTATAATTTATAAAAAGGTTGTTGTCTAATCCTTAAAAATCTCAAAGCAGC
>Glyma11g07910.3 sequence type=CDS gene model=Glyma11g07910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGGGTTTCCGTGGCGTGCGAGAGGGGCATCTTTGGCGACTGCGGTGTTGAAAAAGGAAACCGAAGGTGGTTTGTTTGTTTTTCCGTCTAATCAAAATCAAATCGAATTGGATTGGATACAATACAATACAACCCTATATAAGCCTTCAAAACCTGCGCTGCGTGCTGTCGTTTCATTTGCTTTACTCACCGAAAGTAACGGAGGGATTTCCTTAACCCACAAACTCTCAAATACCCTCTCTCTCTCACCGACCACTATGTTGCAGAGACCTAGACGCCGCTGCGAGGGCACTGCCATGGGCGCCATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCGGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAGAGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGGGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCCCACATATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCATGACGGGGGAGTGGAATTGCCATTGGAGTTTCCTGATGGGACCACGCCAGTTACATGCCGTGTTTCTATATATGATAGCTCCTCTGGTAAGAAGGTTGGTGTGGGGGCCTTAATGGACAAGGCTTCTGCTCCTCCATTACCTGCTGGCAGCATTTACATGGAAGAGGTCCATGTGAAGCTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAGGTAGATCAAATGGTTATTCATTCTGCTTCAGATCTTCGGCCACGGACAACTCTCTGTGGAGACTACTTTTATAATTATTTTACTCGTGGTCTGGACATATTATTTGATGGACAGACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCAAGTAACCCCTTTGGTTCTACTCTTGTATATGGTTATCAAAATATTGCCTTTGAGGTGATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGA >Glyma11g07910.4 sequence type=CDS gene model=Glyma11g07910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGGGTTTCCGTGGCGTGCGAGAGGGGCATCTTTGGCGACTGCGGTGTTGAAAAAGGAAACCGAAGGTGGTTTGTTTGTTTTTCCGTCTAATCAAAATCAAATCGAATTGGATTGGATACAATACAATACAACCCTATATAAGCCTTCAAAACCTGCGCTGCGTGCTGTCGTTTCATTTGCTTTACTCACCGAAAGTAACGGAGGGATTTCCTTAACCCACAAACTCTCAAATACCCTCTCTCTCTCACCGACCACTATGTTGCAGAGACCTAGACGCCGCTGCGAGGGCACTGCCATGGGCGCCATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCGGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAGGAACCCCTGAAGTTGGATGTTGTTATTAGCTTTCCTGATCATGGCTTCCATCTTCGCTTTGATCCGTGGTCTCAGAGATTGCGCCTTATTGAAATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGGGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCCCACATATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCATGACGGGGGAGTGGAATTGCCATTGGAGTTTCCTGATGGGACCACGCCAGTTACATGCCGTGTTTCTATATATGATAGCTCCTCTGGTAAGAAGGTTGGTGTGGGGGCCTTAATGGACAAGGCTTCTGCTCCTCCATTACCTGCTGGCAGCATTTACATGGAAGAGGTCCATGTGAAGCTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAGGTAGATCAAATGGTTATTCATTCTGCTTCAGATCTTCGGCCACGGACAACTCTCTGTGGAGACTACTTTTATAATTATTTTACTCGTGGTCTGGACATATTATTTGATGGACAGACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTTCCCTGGTCATGCTGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCAAGTAACCCCTTTGGTTCTACTCTTGTATATGGTTATCAAAATATTGCCTTTGAGGTGATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGA
>Glyma11g07910.3 sequence type=predicted peptide gene model=Glyma11g07910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFGFPWRARGASLATAVLKKETEGGLFVFPSNQNQIELDWIQYNTTLYKPSKPALRAVVSFALLTESNGGISLTHKLSNTLSLSPTTMLQRPRRRCEGTAMGAIVLDLRPGLGIGPFSLGMPICEAFAQIEQQPNIYDVVHVKYFDEEPLKLDVVISFPDHGFHLRFDPWSQRLRLIEIFDVKRLQMCYSTSLIGGPSTLATFVAVYALFGPTYPGIFDKDRRIYTLFYPGLSFAFPIPSQFTDCCHDGGVELPLEFPDGTTPVTCRVSIYDSSSGKKVGVGALMDKASAPPLPAGSIYMEEVHVKLGEELYFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDLRPRTTLCGDYFYNYFTRGLDILFDGQTHKIKKFVLHTNFPGHADFNSYIKCNFVVYGSDSVGGSFQEVNNSKQRVITPSTKWEQVKEILGDCGRAAIQTQGSASNPFGSTLVYGYQNIAFEVMKNGYIATITLFQS* >Glyma11g07910.4 sequence type=predicted peptide gene model=Glyma11g07910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFGFPWRARGASLATAVLKKETEGGLFVFPSNQNQIELDWIQYNTTLYKPSKPALRAVVSFALLTESNGGISLTHKLSNTLSLSPTTMLQRPRRRCEGTAMGAIVLDLRPGLGIGPFSLGMPICEAFAQIEQQPNIYDVVHVKYFDEEPLKLDVVISFPDHGFHLRFDPWSQRLRLIEIFDVKRLQMCYSTSLIGGPSTLATFVAVYALFGPTYPGIFDKDRRIYTLFYPGLSFAFPIPSQFTDCCHDGGVELPLEFPDGTTPVTCRVSIYDSSSGKKVGVGALMDKASAPPLPAGSIYMEEVHVKLGEELYFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDLRPRTTLCGDYFYNYFTRGLDILFDGQTHKIKKFVLHTNFPGHADFNSYIKCNFVVYGSDLGGSFQEVNNSKQRVITPSTKWEQVKEILGDCGRAAIQTQGSASNPFGSTLVYGYQNIAFEVMKNGYIATITLFQS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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