SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G51120 | AT | Annotation by Michelle Graham. TAIR10: DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding | chr3:18986026-18991886 REVERSE LENGTH=1292 | SoyBase | E_val: 0 | ISS |
| GO:0006352 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation | SoyBase | N/A | ISS |
| GO:0007346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0016570 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone modification | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1946 | KOG | RNA polymerase I transcription factor UAF | JGI | ISS | |
| PTHR26218 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR26218:SF58 | Panther | JGI | ISS | ||
| PF02201 | PFAM | SWIB/MDM2 domain | JGI | ISS | |
| PF02213 | PFAM | GYF domain | JGI | ISS | |
| PF03126 | PFAM | Plus-3 domain | JGI | ISS | |
| UniRef100_G7KGD4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KGD4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D2C7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D2C7 related cluster n=1 Tax=unknown RepID=UPI000233D2C7 | SoyBase | E_val: 0 | ISS |
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Glyma11g07890 not represented in the dataset |
Glyma11g07890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g37393 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g074600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g07890.2 sequence type=CDS gene model=Glyma11g07890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCAGCCGCTTCAACCGCAGCCAGAGACTGCCGCGGGCGGTGCTAGGGATTCGGAGGGCTCGCGGTTGGTTGGAGTTCCCGTCGCGGTCGCTCGCGATGCTGACGTGGCGGAGAGAGAGGGGAACAGTTGCGCGCCGAATTTGCAGGTCACCGTCGTGGACGTCGGTGCCGTTTTGAAACGGAAGCGCGGCCGGCCGGCCAAGGGAGCTCCGAAAGTGGTGCCTCCGGTGAGGCAACAGCAGGACGAGGAGGATGTTTGTTTTATTTGCTTCGACGGTGGGAGCCTCGTTCTCTGTGATCGCCGGGGATGTCCAAAAGCGTATCATCCCGCGTGTATTAAGCGAGACGAAGAGTTTTTTCGATCAAAGGCCAAGTGGAATTGCGGTTGGCATATATGTAGCGTTTGTCAGAAGTCGTCACAATATATGTGCTATACTTGCACGTACTCTTTGTGTAAGGGATGCACAAAAGATGCTGATTTTGTTTGTATCAGAGATAATAAAGGTTTGTGCGGAATATGCATGAGGACTATAATGATGATTGAGAACAGTGCCCAGGGAAATAACGAAAAGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATGTATTTGAAAGGAAAGCTATCTTTAACATTTGATGAGCTCCTTCGAGCTAAAAACCCATGGAAAGGTGCTGCTCCTATGAGTTATAAGATTCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGTTCAGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAGAACAAGAAGCCCAAGAGACAGCCAAAGCTTCTTGGTAAGGGTGATTGCTTGGATAGGATAACTTCAGGTGGTGACAGTGGTGTGTCTTTGCCTGAATGCACAAAATGGGCATCAAAGGAGCTTCTAGAGTTTGTTGCGCATATGAAAAATGGTGATACATCTCTCATGTCTCAATTTGATGTCCAGACTCTCTTGCTGGAGTATGCAAATAAAAATAATCTTCGTGATCCTCAACAGAAGTCCCAAATTGTTTGTGACTCTAGACTTTTAAATTTGTTTGGAAAAGCACGTGTTGGCCACATTGAAATGCTAAAGCTCCTTGAACCCCACTTTCTTTTAAAAGACAATGGCCCTGCAGAAAATACTTTTGGAGCAGGAATTATTAATGTTGTTGCTAATGAAGGGGAGGCCATTGACAATTACAATAAACAGTTGATGTTAGTTGATGACAAGAGATGTAAGACACATAATCCAGATGCATATGCTGCTATAGATGTGCACAACATTAAGTTGATCTACATGCAGAGAAGTCTGATGGAGAATCTAACTGAAGATGCTGAAAAGATTCATGAGAAGGTTGTTGGTTCATTTGTGCGGATAAGAATCTCTAGCAGTGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACCTTACAAAATTGGCACAAGAACAACAGATATTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGCCATATCCATTTCTGAAATTTCTAATCAGGAGTTCTCTGAGGACGAATGCAAGCGGTTGCGTCAGAGTATAAAATATGGGCTCTCAAAGAGATTGACTGTGGGAGAGATTCTAAACAAAGCAGTGACACTTCAAGCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATATTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAACTTAAAGAATATGTGGAGAAGTTGCAGCTACTAAACTCTCCGGAGGAACGTCAACGCAGGCTGCATGAAATTCCAGATGTACACTCTGACCCCAATTTGGATTCAATGTTTGAGTCCGATGAAGATGATGGAGAGTCAGATGAAAGGAAGCAAGATAGCAACATATTTTCAAAATATCTTGGGTTTGATAGAAAAGAGAGGGGTTCTATTTTTCCAAGAATTTCGAATGGCATCTCCAACGACATGGGAAGCAAAACACAAGACTTGCCTGCTACCCAAGAACCGGTTGGGAATACATGCACATTGAAGAATAATATCAACTCTGATGATACAGCTATTGATGATAGCACTAATGCAGTTGTGAAATCAGAAGTGTCCAGTGTTGCAGTGGAAGTTTCATCATCGCTTCTGTCTACTGGGATGCAGCAGTCATTTAATGATTTTTTGAATGATAGATCATGGCATTATCAGGATCCAACTGGGAAGATTCAAGGACCTTTTTCTATGTTGCAGCTGTACAAGTGGAATGCAAGTGGATGTTTCCCTCCAGATCTCAGAATATGGAGGGTAGGTGAGAAACAAGATAACTCTATACTGTTAACCAATGCACTAAGTGAGAAGTGTTCCAAAAATGTGTCATTGCCATTCAACAGCCAATTGCTCTCTCTAGGGGTCAGTGTTACATTGGATGATAAAGGTAATAGTCAGGATGCTGGGAAGAATGCAAAGAATGAAATTTCTACAGATGGCCAAATTATTGAACAGACAAAGGAACAAAAGCCACAGGTGGATAATACCTCTACCCAGTCTGATGGCAAAGATGAACCGGTTAGGAGCAATGGATGTTCCAGCCAGCTGCCTGTATACCCTTTGCTACTGTCAACTGCCATTCCTGAGAAATTGAATGAGAATACTTCTGATAAATTAAGGAAAGGCCATGCAATTGTGGGAAATTCCGAAAATAGAAATAATGGCTCGAACAGGACATCTGATGTGCAGAGTAATAGTGGGCAGAGTTATCAGAAGCAATCAGACAGTGAAGAGAATTCAGGGCAATCTTCTGGACAGACCTGGAGACACCCTAATGTAAATAGTTCTTCCAATTGCTTGGTTACCACGTCTGCTCATGTTTCTAGTACAAAAACATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCATGTAATACAACTTCTGGACTGACCTGGATTCACCCTAATGTAAATAGTTCTTCCAATTGCTTGGTTAACACATCAACCCATGTTTCTGATACAAAACCATCACCACATAAGCTTGGGTTTGATTTGCAAAATCCTCCTTCCCCTCCTGCTTGTAATACATCTTCTGGACAGACCTGGAGACACCCTGATATAAATAGTTCTTCCAATTGCTTAGTTACCACATCAACTCATGTTTCTTCTACAAAAACATCACCGCATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCATGTAATACATCTACATGGCAGGCAATCATTGGTGAGCCCAATGATTTTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGCGAGGATTTGACTGAAGGTTCTAAAAATGATTGTCTCAGTTTTGTTGCAGAGCTTAGCCCAATTCTTGATGCGGGTAAAGGTGATGCCCTGAGCTCCACTGGTGATTTAAACTTACCATCTCACCCGACAGCAGCTGAGGAACCATTACGACAAGCAGATGTGCATCACCATCATCATCAAAGAATTTCTGCGGAGGATTCTTCAAGAAGTTCTAAAGTTGAGGTGGGTACAAAGAACGGTGTTTCAGGTAATCAATGGGATTCAGGCTCAGAAAATTCACCCATTGTTCCATCCCCTGGAACATTGGGCCTGGCTATAGACACCACTTGGAGACTTGGCTTAGAGAATACACACTTGGGATGGAGTGGAATAGATCAAGGAAATGCAAATGTGGGTTGGGGAGTAGGACAGACTGCAGTGCAGGAAAACAGAAGTTCAAGTTCGTACACTTCTACAGTAACTCCAGGCCTTGGGGATAGCCAAACAAGATATGGCAGTGATCGATTTTCTGTGTCCAGAGATCGGGGTTTTCAAGGTCATGGTAGGGAATCAGGTTTTAGTAGAAGCAGAATTCCATATAACAGGCAACCGTCATATGGTGTTGGAAATGGAGGATCATATAGGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAGGGAGCATCCTGTGATTACTGGCACCCATGA
>Glyma11g07890.2 sequence type=predicted peptide gene model=Glyma11g07890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQPLQPQPETAAGGARDSEGSRLVGVPVAVARDADVAEREGNSCAPNLQVTVVDVGAVLKRKRGRPAKGAPKVVPPVRQQQDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEEFFRSKAKWNCGWHICSVCQKSSQYMCYTCTYSLCKGCTKDADFVCIRDNKGLCGICMRTIMMIENSAQGNNEKCEVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLRAKNPWKGAAPMSYKIQSPHELYHLRDDKGSGSENSCIDIESNNLKNKKPKRQPKLLGKGDCLDRITSGGDSGVSLPECTKWASKELLEFVAHMKNGDTSLMSQFDVQTLLLEYANKNNLRDPQQKSQIVCDSRLLNLFGKARVGHIEMLKLLEPHFLLKDNGPAENTFGAGIINVVANEGEAIDNYNKQLMLVDDKRCKTHNPDAYAAIDVHNIKLIYMQRSLMENLTEDAEKIHEKVVGSFVRIRISSSDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEAISISEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKAVTLQAIRVNDLLEAEILRLNHLRDRASEKGHRKELKEYVEKLQLLNSPEERQRRLHEIPDVHSDPNLDSMFESDEDDGESDERKQDSNIFSKYLGFDRKERGSIFPRISNGISNDMGSKTQDLPATQEPVGNTCTLKNNINSDDTAIDDSTNAVVKSEVSSVAVEVSSSLLSTGMQQSFNDFLNDRSWHYQDPTGKIQGPFSMLQLYKWNASGCFPPDLRIWRVGEKQDNSILLTNALSEKCSKNVSLPFNSQLLSLGVSVTLDDKGNSQDAGKNAKNEISTDGQIIEQTKEQKPQVDNTSTQSDGKDEPVRSNGCSSQLPVYPLLLSTAIPEKLNENTSDKLRKGHAIVGNSENRNNGSNRTSDVQSNSGQSYQKQSDSEENSGQSSGQTWRHPNVNSSSNCLVTTSAHVSSTKTSPHKLGFDLHNPPSPPACNTTSGLTWIHPNVNSSSNCLVNTSTHVSDTKPSPHKLGFDLQNPPSPPACNTSSGQTWRHPDINSSSNCLVTTSTHVSSTKTSPHKLGFDLHNPPSPPACNTSTWQAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSIMKCGEDLTEGSKNDCLSFVAELSPILDAGKGDALSSTGDLNLPSHPTAAEEPLRQADVHHHHHQRISAEDSSRSSKVEVGTKNGVSGNQWDSGSENSPIVPSPGTLGLAIDTTWRLGLENTHLGWSGIDQGNANVGWGVGQTAVQENRSSSSYTSTVTPGLGDSQTRYGSDRFSVSRDRGFQGHGRESGFSRSRIPYNRQPSYGVGNGGSYRPLPKGQRVCKFYESGYCKKGASCDYWHP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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