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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36400 | AT | Annotation by Michelle Graham. TAIR10: FAD-linked oxidases family protein | chr4:17197265-17200472 FORWARD LENGTH=559 | SoyBase | E_val: 1.00E-49 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008762 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016614 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| GO:0051990 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: (R)-2-hydroxyglutarate dehydrogenase activity | SoyBase | N/A | ISS |
| PTHR11748 | Panther | D-LACTATE DEHYDROGENASE | JGI | ISS | |
| PTHR11748:SF17 | Panther | D-LACTATE DEHYDROGENASE | JGI | ISS | |
| PF01565 | PFAM | FAD binding domain | JGI | ISS | |
| PF02913 | PFAM | FAD linked oxidases, C-terminal domain | JGI | ISS | |
| UniRef100_G7KGB4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: D-2-hydroxyglutarate dehydrogenase n=1 Tax=Medicago truncatula RepID=G7KGB4_MEDTR | SoyBase | E_val: 1.00E-69 | ISS |
| UniRef100_I3SZL3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Medicago truncatula RepID=I3SZL3_MEDTR | SoyBase | E_val: 1.00E-71 | ISS |
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Glyma11g07801 not represented in the dataset |
Glyma11g07801 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g37490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g073500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g07801.2 sequence type=transcript gene model=Glyma11g07801 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CACGGGTGTTCACATGGGTCCATCTGTGTCTTACAGTGTGTCAGAACTCAGAACAACTGAACCTCCTAGTTAACACCATGCTATAAAAAATACACACAACGTCCTCCACTTTCCACTTACGCTCCTTAAACCCCTTCTTCAATCGCCGAAGGAATCCACCTCTTCTCCCTTCAGCAACGTCGTGTTCTTGGTTTACTTCGGGGACATCTTTTGATGAAAAATTGACGCAGTTACCGAGCAATATTGTTCGCAGGGATCATCAAGTTTTGTCATTTTTCAACCCTTCAAGAAATTTCGCGGAAACCAAACAATGGGGTGTTGGAATTCAGTGCAAATGCTTTGGTTCTATGGCTGGGTCGGTTCAAAGGAACCCCAGATTCTCAAAGTTGAATGATGATGATGTTCGATACTTTGAGGGAATATTGGGTACCAAAAATGTTGTTCAAGATGAGGGCAAGCTTGTCACTTCAAACACTGATTGGATGCATAAGTACAAAGGCTCCAGTAAGCTATTGTTACAACCTAGGACCGCTGACCAGGTTTCTCAGATTCTTAAATATTGTAACTCCAGAAACTTGGCTGTTGTTCCCCAAGGTGGAAATACTGGTCTTGTAGGAGTAAGTGTGCCTGTCTTTGATGAAGTGATTGTTTGTCTTAGTTCTATGAATAAGATCATATATTTCGACAAGATTTTGTCGCAAATTGAACCTTATGTATATGAATGGACATCTGAGCGCCGAGGTAGTATTAGCGCGGAGCATGGTCTGGGACTAATGAAAGCCAACGAAATTTTCTACAGCAAATCACGTGAAACTGTGCAAGTGATGGCTTCAATCAAGAATATGCTGGACCCTAATCACATACTCAACCCGTATAAAGTTCTTCCTCACTCTCTCATTTCATAATCTGATGTGGAAAACTTGATGTTGTATTCATATCTTTGTTCACTTCCTTAAAAAAGGTGAGAATGCTACTTCTTTACTTGCCGGTGACCTCACTCTTCTAAAAGTGTATTGCTACATTGTGAATAATAAATATAAATATTAGTGTAATAAATTGGTGACAATTTTTTATAATCTC
>Glyma11g07801.1 sequence type=CDS gene model=Glyma11g07801 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGAATCCACCTCTTCTCCCTTCAGCAACGTCGTGTTCTTGGTTTACTTCGGGGACATCTTTTGATGAAAAATTGACGCAGTTACCGAGCAATATTGTTCGCAGGGATCATCAAGTTTTGTCATTTTTCAACCCTTCAAGAAATTTCGCGGAAACCAAACAATGGGGTGTTGGAATTCAGTGCAAATGCTTTGGTTCTATGGCTGGGTCGGTTCAAAGGAACCCCAGATTCTCAAAGTTGAATGATGATGATGTTCGATACTTTGAGGGAATATTGGGTACCAAAAATGTTGTTCAAGATGAGGGCAAGCTTGTCACTTCAAACACTGATTGGATGCATAAGTACAAAGGCTCCAGTAAGCTATTGTTACAACCTAGGACCGCTGACCAGGTTTCTCAGATTCTTAAATATTGTAACTCCAGAAACTTGGCTGTTGTTCCCCAAGGTGGAAATACTGGTCTTGTAGGAGTAAGTGTGCCTGTCTTTGATGAAGTGATTGTTTGTCTTAGTTCTATGAATAAGATCATATATTTCGACAAGATTTTGTCGCAAATTGAACCTTATGTATATGAATGGACATCTGAGCGCCGAGGTAGTATTAGCGCGGAGCATGGTCTGGGACTAATGAAAGCCAACGAAATTTTCTACAGCAAATCACGTGAAACTGTGCAAGTGATGGCTTCAATCAAGAATATGCTGGACCCTAATCACATACTCAACCCGTATAAAGTTCTTCCTCACTCTCTCATTTCATAA >Glyma11g07801.2 sequence type=CDS gene model=Glyma11g07801 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGGGTCGGTTCAAAGGAACCCCAGATTCTCAAAGTTGAATGATGATGATGTTCGATACTTTGAGGGAATATTGGGTACCAAAAATGTTGTTCAAGATGAGGGCAAGCTTGTCACTTCAAACACTGATTGGATGCATAAGTACAAAGGCTCCAGTAAGCTATTGTTACAACCTAGGACCGCTGACCAGGTTTCTCAGATTCTTAAATATTGTAACTCCAGAAACTTGGCTGTTGTTCCCCAAGGTGGAAATACTGGTCTTGTAGGAGTAAGTGTGCCTGTCTTTGATGAAGTGATTGTTTGTCTTAGTTCTATGAATAAGATCATATATTTCGACAAGATTTTGTCGCAAATTGAACCTTATGTATATGAATGGACATCTGAGCGCCGAGGTAGTATTAGCGCGGAGCATGGTCTGGGACTAATGAAAGCCAACGAAATTTTCTACAGCAAATCACGTGAAACTGTGCAAGTGATGGCTTCAATCAAGAATATGCTGGACCCTAATCACATACTCAACCCGTATAAAGTTCTTCCTCACTCTCTCATTTCATAA
>Glyma11g07801.1 sequence type=predicted peptide gene model=Glyma11g07801 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRNPPLLPSATSCSWFTSGTSFDEKLTQLPSNIVRRDHQVLSFFNPSRNFAETKQWGVGIQCKCFGSMAGSVQRNPRFSKLNDDDVRYFEGILGTKNVVQDEGKLVTSNTDWMHKYKGSSKLLLQPRTADQVSQILKYCNSRNLAVVPQGGNTGLVGVSVPVFDEVIVCLSSMNKIIYFDKILSQIEPYVYEWTSERRGSISAEHGLGLMKANEIFYSKSRETVQVMASIKNMLDPNHILNPYKVLPHSLIS* >Glyma11g07801.2 sequence type=predicted peptide gene model=Glyma11g07801 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGSVQRNPRFSKLNDDDVRYFEGILGTKNVVQDEGKLVTSNTDWMHKYKGSSKLLLQPRTADQVSQILKYCNSRNLAVVPQGGNTGLVGVSVPVFDEVIVCLSSMNKIIYFDKILSQIEPYVYEWTSERRGSISAEHGLGLMKANEIFYSKSRETVQVMASIKNMLDPNHILNPYKVLPHSLIS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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