SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66360 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal RNA adenine dimethylase family protein | chr5:26510329-26511711 FORWARD LENGTH=380 | SoyBase | E_val: 5.00E-124 | ISS |
| GO:0000154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA modification | SoyBase | N/A | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0046085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: adenosine metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0000179 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: rRNA (adenine-N6,N6-)-dimethyltransferase activity | SoyBase | N/A | ISS |
| GO:0008649 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: rRNA methyltransferase activity | SoyBase | N/A | ISS |
| GO:0016433 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: rRNA (adenine) methyltransferase activity | SoyBase | N/A | ISS |
| KOG0820 | KOG | Ribosomal RNA adenine dimethylase | JGI | ISS | |
| PTHR11727 | Panther | DIMETHYLADENOSINE TRANSFERASE | JGI | ISS | |
| PF00398 | PFAM | Ribosomal RNA adenine dimethylase | JGI | ISS | |
| UniRef100_G7KGB1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dimethyladenosine transferase-like protein n=1 Tax=Medicago truncatula RepID=G7KGB1_MEDTR | SoyBase | E_val: 2.00E-154 | ISS |
| UniRef100_I1J8P9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J8P9_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma11g07771 not represented in the dataset |
Glyma11g07771 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g37520 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g073200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g07771.1 sequence type=CDS gene model=Glyma11g07771 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGCGAAGCGCATCAAACATGTGCATGAGAGTGGCAGCATGCTTGGCGCCACTAGACGCGTGGTTGGATTCATTCCTCGGAGGTTACGATCGGTGCGGCAAGTGCATGGAGATGGGGATGGCGAAGAGGCTCTACGTTTCCACAAGAGCAGAGGCCAACACATTCTCATCAACCCTCGAATTCTGGACACCATCGTTCGGAGATCCGCGATAAACCCCACCGACACGGTCCTCGAAATCGGACCCGGCACCGGCAACCTCACCCTCAAGCTCCTCGAAGCCGCGCACAAGGTCGTAGCCATCGAGATCGATCACCGCATGGTCCAGGTTCTCGAGAAGCGCGTCCTCCAACGTGGCCTCAAAGATAAGCTCAGGGTTATAGAAAGAGATGCAATGAGAGCCCCGTTCCCGCGGTTTGATCTTGTTGTGGCCAACATTCCTTACCGGATATCTTCCCCTCTTGTGATTAAACTGGTGTATGGAGCAACGCCGTTTCGGAGTGCCACGCTTCTGCTCCAGAAAGAGTTCGCTCGGAGGTTACTGGCTTGCCCCGGTGACTCCGGTGGGTTTAACCGGTTGTCGGCGAATGTGAAGCTTGTGGCTGACGTGGAGCTTGTGATGGATGTAAGCAAGAGGGACTTTCTCCCTTCACCTAAAGTTGATTCTTCTGTGGTCATAATTCGCCCCAAGCATCAAATTCCCAATGTGGATCTTCATGAATGGAGGTCTTTCACCAGGACTTGTTTTAGTAGTAATAGGAACAAGACACTCGGGGCATTGTTTAAGCTTAAGGGGAAAGTTTTTGAGTTGTTTAAAATCTCCAATGGAAATGATGAATGTTCTCTCCACAAGGGTGATGAGGTTCAAGACGAAGGAGGGTTGACCTCGTTCAAGGAAAAGATTATTGGAGTGGTTAGAACGGGTGGCTTTGAAGATAAAAGACCTGCAAAACTTTCTCTCCAGGAGCTTCTGCATTTGCTCTCTTTGTTCAATCAAGCTGGCATTTATTTTAATCACCGTGGACGTCACAAGATTGAAGATATGCTTGACGACAATGATGAATAG
>Glyma11g07771.1 sequence type=predicted peptide gene model=Glyma11g07771 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFAKRIKHVHESGSMLGATRRVVGFIPRRLRSVRQVHGDGDGEEALRFHKSRGQHILINPRILDTIVRRSAINPTDTVLEIGPGTGNLTLKLLEAAHKVVAIEIDHRMVQVLEKRVLQRGLKDKLRVIERDAMRAPFPRFDLVVANIPYRISSPLVIKLVYGATPFRSATLLLQKEFARRLLACPGDSGGFNRLSANVKLVADVELVMDVSKRDFLPSPKVDSSVVIIRPKHQIPNVDLHEWRSFTRTCFSSNRNKTLGALFKLKGKVFELFKISNGNDECSLHKGDEVQDEGGLTSFKEKIIGVVRTGGFEDKRPAKLSLQELLHLLSLFNQAGIYFNHRGRHKIEDMLDDNDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
