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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G51050 | AT | Annotation by Michelle Graham. TAIR10: FG-GAP repeat-containing protein | chr3:18954023-18957698 FORWARD LENGTH=698 | SoyBase | E_val: 0 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0007160 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell-matrix adhesion | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0008305 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integrin complex | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_B9T4Y7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aldehyde dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T4Y7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LHX1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHX1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g07720 not represented in the dataset |
Glyma11g07720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g072700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g07720.1 sequence type=CDS gene model=Glyma11g07720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGAAGCGGGATTTGGCCATTCTTATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAGCAAGATGGTGGTATTTCGTTCAAAGATGCGTGGATGCACCTAACCGATGAATATCCAATCAAATATGAAGCCGAACGCCTTCCGCCGCCGCTCGTCGCTGATCTCAACGGAGACGGCAAAAAGGAAGTTCTTGTGGCCACTCACGATGCTAAAATTCAGGTTTTGGAGCCCCATAGTAGGCGCGTCGATGAAGGATTCAGTGAGGCACGTGTGTTGGCTGAGGTGTCTTTGTTACCTGACAAAGTACGTGTTATGACTGGGAGACGCCCTGTTGCCATGGCCACCGGCTATATTGACCGGTATAAAATTGGGCAGCCACAGAAACAGGTTTTGGTTGTGGTAACATCGGGTTGGTCTGTGATGTGTTTTGATTCCAACCTTCAAAAGTTGTGGGAAAATAATTTACAGGAGGATTTTCCACATAATGCTCACCATAGGGAAGTTGCAATCTCTATAAGCAATTATACTCTAAAGCATGGAGATACAGGATTGATAATTGTCGGTGGCAGAATGGAAATGCAGCCACATATTTTTATGGACCCTTTTGAAGAAATGGGTATGGGTGCAAGGTTTGCTGAGCAACATCAAAGAAGTGCTGCTGAAAAGGAGGCTTCTGGAACTGTGGATTTACGACATTTTGCATTTTATGCATTTGCTGGTCGATCTGGTGATGAACGATGGAGCAGAAAAAATGAGAACATTGAAGCACATTCTTCAGATGCATCACAGTTACTTCCACAGCATAACTACAAGCTTGATGTTCATGCTCTGAATACCCGTCAACCTGGAGAGTTTGAATGCAGGGAATTCAGAGAATCGATCCTGGGAGTTATGCCTCATCAATGGGCTAGGAGAGAAGATACTTTATTTAAGCTTGCCCACTTCAGGCGGCACAAGAGAAAAGCATTGAAGAAAACACCTGGAAAGGCTATAAGTTACCCTTTTCACAAGCCCGAGGAAAACCATCCTCCAGGGAAGGACTCAACCAAAAAAATTTCAAACATAATTGGGAAAGCAGCAAGCTATGCTGGTTCAGCAAAATCTAAGAAGCACCTTCCTTATGTTCCTACCATAACCAACTACACTCAAGTTTGGTGGGTTCCCAATGTTGTTGTGTCTCATCAGAAGGAGGGCATAGAAGCTCTTCATCTAGCAACTGGTCGAACAATATGCAAGTTTCATCTCCAGGAAGGTGGTCTACATGCTGATGTTAATGGTGATGGAGTTCTAGATCATGTGCAGGCTGTTGGAGGAAATGGTGCTGAGCAGACTGTCGTTAGTGGGTCCATGGAAGTGCTACGTCCTTGTTGGGCTGTTGCAACGTCTGGTGTACCAGTACGAGAACAACTCTTCAATGTATCTATTTGTCATTATACCCATTTTAACTTATTCCAACATGGAGAACTTTATAGAAGCTACAGTCAAGGTTCAGATACTGCTTCTTTAGAGGTAGCAACACCTATTCTAATTCCTAGAAGTGATGGTCATAGGCATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAGATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGGCAACAATCAACTGGTGTTACATGGTCAAACCTACCCTCCCCATCAGGAATGATGGAAGGTGGTCTGGTGATTCCCACACTAAAGCCTCTTTCCTTACGGTTGCATGATAATCAAGAAATGATCCTTGCTGCTGGGGAACAAGAAGCCGTGATAATATCACCTGGAGGTAGTATATTAGCCACAATTGAACTACCTGGTCCACCAACACATGTCTTGATCACTGAGGACTTTTCAAATGATGGGCTCACTGACCTTATTCTTGTCACCTCTCATGGAGTATATGGCTTTGTTCAGACCAGGCAACCGGGTGCTCTCTTCTTCAGCATGCTGGTTGGCTGTCTCATAGTCGTGATGGGGGTTATATTTGTCACCCAGCACTTGAATTCCACAAAGGGGAAGCCTCGTCCCTCATCTGGTCCACGGTGA
>Glyma11g07720.1 sequence type=predicted peptide gene model=Glyma11g07720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRKRDLAILMLSAFAIFFTLQQDGGISFKDAWMHLTDEYPIKYEAERLPPPLVADLNGDGKKEVLVATHDAKIQVLEPHSRRVDEGFSEARVLAEVSLLPDKVRVMTGRRPVAMATGYIDRYKIGQPQKQVLVVVTSGWSVMCFDSNLQKLWENNLQEDFPHNAHHREVAISISNYTLKHGDTGLIIVGGRMEMQPHIFMDPFEEMGMGARFAEQHQRSAAEKEASGTVDLRHFAFYAFAGRSGDERWSRKNENIEAHSSDASQLLPQHNYKLDVHALNTRQPGEFECREFRESILGVMPHQWARREDTLFKLAHFRRHKRKALKKTPGKAISYPFHKPEENHPPGKDSTKKISNIIGKAASYAGSAKSKKHLPYVPTITNYTQVWWVPNVVVSHQKEGIEALHLATGRTICKFHLQEGGLHADVNGDGVLDHVQAVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNVSICHYTHFNLFQHGELYRSYSQGSDTASLEVATPILIPRSDGHRHRKGSHGDVIFLTNRGEITSYSPGLHGHDAIWQWQQSTGVTWSNLPSPSGMMEGGLVIPTLKPLSLRLHDNQEMILAAGEQEAVIISPGGSILATIELPGPPTHVLITEDFSNDGLTDLILVTSHGVYGFVQTRQPGALFFSMLVGCLIVVMGVIFVTQHLNSTKGKPRPSSGPR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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