SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G51060 | AT | Annotation by Michelle Graham. TAIR10: Lateral root primordium (LRP) protein-related | chr3:18964606-18966130 FORWARD LENGTH=370 | SoyBase | E_val: 2.00E-71 | ISS |
| GO:0009938 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of gibberellic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation | SoyBase | N/A | ISS |
| GO:0010252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin homeostasis | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048479 | GO-bp | Annotation by Michelle Graham. GO Biological Process: style development | SoyBase | N/A | ISS |
| GO:0048480 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stigma development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0046982 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity | SoyBase | N/A | ISS |
| PF05142 | PFAM | Domain of unknown function (DUF702) | JGI | ISS | |
| UniRef100_B9MXK1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Short internodes 2 n=1 Tax=Populus trichocarpa RepID=B9MXK1_POPTR | SoyBase | E_val: 2.00E-69 | ISS |
| UniRef100_I1LHX0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHX0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g07710 not represented in the dataset |
Glyma11g07710 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g37590 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g072500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g07710.1 sequence type=CDS gene model=Glyma11g07710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGGTTTATTCTCACTAGGAGGTAGTAGAGGTAACACCAATCCCCAAGAGGAAATCCCTCCTCCGGATACCTTATTCTGGTGTAACAAGAATGATGACGTTTCCTCTTACCACCGAGGTAGTAGCGGCTTTGAGCTATGGAACCAGCAACAGCTTCAACATCAGCAACAACAGCTCATGGGCCATGACCCTCCTCCGCAGCCGCGCCCTCTCTTTCACCAAGATCTCTACTCCGCGTTGGGCGTTGGGCCCAGCAGGCCCATCTCTGACGATCAGTCGTCTTCGAGATCCAGTTTCCTTCTTGGAGCAAGCGGTGGCGGTAGCGCAGGAGGAGGGATTAGCTGTCAGGACTGCGGGAACCAAGCTAAGAAAGACTGCCCTCACATGCGGTGCAGAACTTGCTGCAAGAGCCGCGGCTTCGATTGCCAAACCCATGTCAAGAGCACTTGGGTCCCCGCTTCACGTCGTCGCGAACGACTACAACAACTTTCTGCGTTGCAACAACACCAACAACAACAACAAACCCTCGAACCTGCTTCTTCTGCTGGAGGAGACCTTCCCAAAAGGCACAGAGCGAGAGATCATCATCATTCTCCTCTCGCCTGCACTCGCTTCCCTTCTAACCCCTCCTCCTCAGGGTTAGAGGAGGTGAATTTCCCGGCTGTGGTGAGGTCTGCTGCGGAGTTCAGATGCGTACGTGTGAGTTCCATGGACGAGGAGGCGGAGGAGGAGTACGCATACTCAACGGCTGTGAACATTGCAGGACATGTGTTCAAAGGAATTTTATATGACTATGGTCCAGAAGGTATGAACACTAATTACATGGATGCTGTTGCTGCTGCTGGGGAAAGCTCTTCCACCGGTGTTGGTGCCTTGAACCTAACCACTGGTGCCATTGTTTCGGAGCCACTCGGAGTTGATCCTTCTTCCTTGTATCCGGCTCCTCTTAACTCCTTCATGCCTGGTAGCGGTACGCAATTCTTCCCTCACCCACGATCTTGA
>Glyma11g07710.1 sequence type=predicted peptide gene model=Glyma11g07710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGLFSLGGSRGNTNPQEEIPPPDTLFWCNKNDDVSSYHRGSSGFELWNQQQLQHQQQQLMGHDPPPQPRPLFHQDLYSALGVGPSRPISDDQSSSRSSFLLGASGGGSAGGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERLQQLSALQQHQQQQQTLEPASSAGGDLPKRHRARDHHHSPLACTRFPSNPSSSGLEEVNFPAVVRSAAEFRCVRVSSMDEEAEEEYAYSTAVNIAGHVFKGILYDYGPEGMNTNYMDAVAAAGESSSTGVGALNLTTGAIVSEPLGVDPSSLYPAPLNSFMPGSGTQFFPHPRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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