SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66450 | AT | Annotation by Michelle Graham. TAIR10: Phosphatidic acid phosphatase (PAP2) family protein | chr5:26534801-26535951 FORWARD LENGTH=286 | SoyBase | E_val: 3.00E-68 | ISS |
| GO:0006464 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular protein modification process | SoyBase | N/A | ISS |
| GO:0006651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: diacylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008195 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidate phosphatase activity | SoyBase | N/A | ISS |
| GO:0008474 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: palmitoyl-(protein) hydrolase activity | SoyBase | N/A | ISS |
| KOG3146 | KOG | Dolichyl pyrophosphate phosphatase and related acid phosphatases | JGI | ISS | |
| PTHR11247 | Panther | PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 | JGI | ISS | |
| PTHR11247:SF3 | Panther | PALMITOYL PROTEIN THIOESTERASE-RELATED | JGI | ISS | |
| PF01569 | PFAM | PAP2 superfamily | JGI | ISS | |
| UniRef100_F4J220 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidic acid phosphatase (PAP2) family protein n=2 Tax=Arabidopsis thaliana RepID=F4J220_ARATH | SoyBase | E_val: 5.00E-61 | ISS |
| UniRef100_I1LHV8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHV8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g07590 not represented in the dataset |
Glyma11g07590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g37710 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g071400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g07590.2 sequence type=transcript gene model=Glyma11g07590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACAAAATGCCTACCATTTGATTGGAAAGAAAAAACTTTTTCGTTTTATATAAGGAAAATTTGCTGTCCATAGTGTTTTGGAATTGTGGACACAGAATGAACTCGTCTGTTGGACTTTCCGTGGAGTACCTCCCTCTATGGAATAATAAATAGCAGTTGAGAAAGCCTCGTTTTTGTAATGGAATATTGGAGCGTCACCCTCTCACATGGCGGCAGCAACCACAATTTGCTACGGTCCCTCCTCTTATATTCTTCTTGGCTCAAATTTACTTAGACAGGGACACTTGAAAAACACTTCATTTGCTCATCGTTTTTCTCCTTCAAGATCATTCCTTTGTAACGGATTTGTTCCCAGGAAACCTGTTTTGGGAAGAAACTCGTTCTGGGTATCAAAAACCATGGATGAATCCGCGAGAACTTCTGCTTTCAGAGATGGAAAAGGCGATGAAACCATCCAAGTGTTTGAACAAGAAGCTTTCATCGATGGGTCAACCCCGTTTCAGTCCAAGTTTCTGTCCCCGGAGGTGGAATACAACCTCAATCGAATGAGCAAGTGGATAGTAACTGCCCTCTTTGGCGGTTTCATTCTTTGGAGGCATGACGCAGAAGCCTTATGGTTTACAGCAGGGTCTGTTCTGAATGCTATGCTTTCTGTTTTGCTCAAACGTATACTGAATCAGGAACGGCCTTCAACCCTGAAATCTGACCCTGGGATGCCATCATCACATGCACAATCCATATTCTTTACTGTCTTCTTTGTTATTTTGTCAGGCGTAGAATGGCTTGGGCTAAATGGATTCACCATTGCCATCAGTGCATCGGTCCTGACATTTGGTTCTTTTTTTTCGTACCTGAGGGTGTCGCAACAGCTTCATACAGTGAGCCAAGTGGTTGTTGGAGCTGCTATTGGATCCATTTTCTCTATTTTATGGTACTGGCTTTGGAACGGCTATATGCTGGATGCATTTGTATCTTCTCTGTGGGTTAGAATCATTGTCGTTTTGGGGTCTGCAGGACTTTGCATAGGTTTTGTTTTATTTGCGATTCGTTATTGGCTTCAAGACGACTAGAACTTCAAGACGTGTACAACATTGCAATAATAACACATCTCATTTTGTTTCTTTCAAGTTTCAATGTTGCGTGAAGTAGTGAGAATTTGAATCCGGTATCAGATTATATTAGATGTTTCTTTAGGAAGTTCAGTGCCACGACATGCTCTGGAGTCTGAAGGAATTATAAATAATAGTGAAGTGCCCTTTTACTTAAAGTATTTCATGAAATGACGGTGAAATGAAAATGCCATGCAGTTTTATCATTCAAATCATCCCTATAAGTCTTCTGTATTATTTGTTAGAATGATGTCGGTCTGTACCCAAGCGATCCCATTACAGGGGGAAAAAGAGAACGTGATATGGATGCTCTATGCTCTATGGTGTTGACTGTTGAGTCCCTTACCGAGAATTTGCAAACAAATGCCTCAGCTCACAGGAGTTAATACAACTATAATTTTTACAAACACATAATCTATTATAATAGGCAGATTTTTATGTAATTTTTTAAAATAAGTAACTAGTTAATATAATTAAGTAAAAAAGATCTATAATAACAACTCCTTTAGGTGAAATGTGTGATTAGACTATATTATTTTAAACTTCAATATTGTTCGGCCCAATTCTTTCTGGCACATATAAACTTCAAATTTGTGATTAGGCTATATTATTACAAATTTCATTTTATCAAACATACATTCAAGAC
>Glyma11g07590.1 sequence type=CDS gene model=Glyma11g07590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCAGCAACCACAATTTGCTACGGTCCCTCCTCTTATATTCTTCTTGGCTCAAATTTACTTAGACAGGGACACTTGAAAAACACTTCATTTGCTCATCGTTTTTCTCCTTCAAGATCATTCCTTTGTAACGGATTTGTTCCCAGGAAACCTGTTTTGGGAAGAAACTCGTTCTGGGTATCAAAAACCATGGATGAATCCGCGAGAACTTCTGCTTTCAGAGATGGAAAAGGCGATGAAACCATCCAAGTGTTTGAACAAGAAGCTTTCATCGATGGGTCAACCCCGTTTCAGTCCAAGTTTCTGTCCCCGGAGGTGGAATACAACCTCAATCGAATGAGCAAGTGGATAGTAACTGCCCTCTTTGGCGGTTTCATTCTTTGGAGGCATGACGCAGAAGCCTTATGGTTTACAGCAGGGTCTGTTCTGAATGCTATGCTTTCTGTTTTGCTCAAACGTATACTGAATCAGGAACGGCCTTCAACCCTGAAATCTGACCCTGGGATGCCATCATCACATGCACAATCCATATTCTTTACTGTCTTCTTTGTTATTTTGTCAGGCGTAGAATGGCTTGGGCTAAATGGATTCACCATTGCCATCAGTGCATCGGTCCTGACATTTGGTTCTTTTTTTGTAAGTTCGTACCTGAGGGTGTCGCAACAGCTTCATACAGTGAGCCAAGTGGTTGTTGGAGCTGCTATTGGATCCATTTTCTCTATTTTATGGTACTGGCTTTGGAACGGCTATATGCTGGATGCATTTGTATCTTCTCTGTGGGTTAGAATCATTGTCGTTTTGGGGTCTGCAGGACTTTGCATAGGTTTTGTTTTATTTGCGATTCGTTATTGGCTTCAAGACGACTAG >Glyma11g07590.2 sequence type=CDS gene model=Glyma11g07590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCAGCAACCACAATTTGCTACGGTCCCTCCTCTTATATTCTTCTTGGCTCAAATTTACTTAGACAGGGACACTTGAAAAACACTTCATTTGCTCATCGTTTTTCTCCTTCAAGATCATTCCTTTGTAACGGATTTGTTCCCAGGAAACCTGTTTTGGGAAGAAACTCGTTCTGGGTATCAAAAACCATGGATGAATCCGCGAGAACTTCTGCTTTCAGAGATGGAAAAGGCGATGAAACCATCCAAGTGTTTGAACAAGAAGCTTTCATCGATGGGTCAACCCCGTTTCAGTCCAAGTTTCTGTCCCCGGAGGTGGAATACAACCTCAATCGAATGAGCAAGTGGATAGTAACTGCCCTCTTTGGCGGTTTCATTCTTTGGAGGCATGACGCAGAAGCCTTATGGTTTACAGCAGGGTCTGTTCTGAATGCTATGCTTTCTGTTTTGCTCAAACGTATACTGAATCAGGAACGGCCTTCAACCCTGAAATCTGACCCTGGGATGCCATCATCACATGCACAATCCATATTCTTTACTGTCTTCTTTGTTATTTTGTCAGGCGTAGAATGGCTTGGGCTAAATGGATTCACCATTGCCATCAGTGCATCGGTCCTGACATTTGGTTCTTTTTTTTCGTACCTGAGGGTGTCGCAACAGCTTCATACAGTGAGCCAAGTGGTTGTTGGAGCTGCTATTGGATCCATTTTCTCTATTTTATGGTACTGGCTTTGGAACGGCTATATGCTGGATGCATTTGTATCTTCTCTGTGGGTTAGAATCATTGTCGTTTTGGGGTCTGCAGGACTTTGCATAGGTTTTGTTTTATTTGCGATTCGTTATTGGCTTCAAGACGACTAG
>Glyma11g07590.1 sequence type=predicted peptide gene model=Glyma11g07590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAATTICYGPSSYILLGSNLLRQGHLKNTSFAHRFSPSRSFLCNGFVPRKPVLGRNSFWVSKTMDESARTSAFRDGKGDETIQVFEQEAFIDGSTPFQSKFLSPEVEYNLNRMSKWIVTALFGGFILWRHDAEALWFTAGSVLNAMLSVLLKRILNQERPSTLKSDPGMPSSHAQSIFFTVFFVILSGVEWLGLNGFTIAISASVLTFGSFFVSSYLRVSQQLHTVSQVVVGAAIGSIFSILWYWLWNGYMLDAFVSSLWVRIIVVLGSAGLCIGFVLFAIRYWLQDD* >Glyma11g07590.2 sequence type=predicted peptide gene model=Glyma11g07590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAATTICYGPSSYILLGSNLLRQGHLKNTSFAHRFSPSRSFLCNGFVPRKPVLGRNSFWVSKTMDESARTSAFRDGKGDETIQVFEQEAFIDGSTPFQSKFLSPEVEYNLNRMSKWIVTALFGGFILWRHDAEALWFTAGSVLNAMLSVLLKRILNQERPSTLKSDPGMPSSHAQSIFFTVFFVILSGVEWLGLNGFTIAISASVLTFGSFFSYLRVSQQLHTVSQVVVGAAIGSIFSILWYWLWNGYMLDAFVSSLWVRIIVVLGSAGLCIGFVLFAIRYWLQDD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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