Glyma11g07530 - SoyBase

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Report for Sequence Feature Glyma11g07530

Feature Type:	gene_model
Chromosome:	Gm11
Start:	5279032
stop:	5282540
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g07530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01050	AT	Annotation by Michelle Graham. TAIR10: pyrophosphorylase 1 \| chr1:31382-32670 REVERSE LENGTH=212	SoyBase	E_val: 6.00E-126	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0019915	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid storage	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0004427	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inorganic diphosphatase activity	SoyBase	N/A	ISS
KOG1626	KOG	Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38	JGI		ISS
PTHR10286	Panther	INORGANIC PYROPHOSPHATASE	JGI		ISS
PF00719	PFAM	Inorganic pyrophosphatase	JGI		ISS
UniRef100_C6SYN5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYN5_SOYBN	SoyBase	E_val: 5.00E-155	ISS
UniRef100_G7KEZ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Soluble inorganic pyrophosphatase n=1 Tax=Medicago truncatula RepID=G7KEZ5_MEDTR	SoyBase	E_val: 1.00E-139	ISS

Expression Patterns of Glyma11g07530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g07530 not represented in the dataset	Glyma11g07530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g07530

Paralog	Evidence	Comments
Glyma01g37790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g07530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g070800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g07530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g07530

Limit To All Plant Sequences

>Glyma11g07530.2   sequence type=transcript   gene model=Glyma11g07530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACGACACATATTCACTCATGGACTGGCCGGTGGCCGGTGGCCGCTGAACCGAGTGCTATATGCATTACCCGTTTTATTCTTCACTTGTTTCGCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAACCTCACCCTAAGCTCAATGAAAGAATTCTGTCTTCTCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGGGCCAGGAGCTCCAGCAGTTTTCAACTGTGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTCTAATGCAGGAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTCCGCCATTACACAGACATCAAGGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTGTATCCTGTTATTTGCACTTATACATAAACCACATGCATCTCTGTACGAGTTATTGACAATTAATGATTAGTTTCTTTTACAATAAAGCCTATAGAACGTTTGGGCCAATATAAAA

>Glyma11g07530.3   sequence type=transcript   gene model=Glyma11g07530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCTGCTTTCCTTTTCATGATTCGTTTTTTCATTCTCTGCATCGCTCTCGTTGATTGTTATGCTCCTTCTTTTCCTTTTTCTTGTTTCTCGATCTAATGCAACCTGAAAAAAAAAAAAAAAAATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAACCTCACCCTAAGCTCAATGAAAGAATTCTGTCTTCTCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGGGCCAGGAGCTCCAGCAGTTTTCAACTGTGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTCTAATGCAGGAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTCCGCCATTACACAGACATCAAGGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTAGAAACTGAATAGCCAATTCCAATTATGTAAAATGTGAATGAAACTCCATAAACATTCTGATTTCCGTGCCGTTCTGTTATGGCACTACTGCTGCCTCGGTTCTTGACACAACAGTGTCAAAAACTTTCTGCTTTGGGATGCGGCTGTACTGCTACTCAATAATGAGTTCATTTCTAGTATTGAAGAGTCCTTTGTTTGGTATTGGAGAAATGGTAACACATGAATGAATTTTCAGTTAAGCAAATTCCTCCAGTTTTACTTTTGATAAAGTTACAAATAATAGTTTGTGTTTTTCCTTAAATTTGACATGAAAAGATAGAGACTTGGATT

Coding sequences of Glyma11g07530

Limit To All Plant Sequences

>Glyma11g07530.1   sequence type=CDS   gene model=Glyma11g07530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAACCTCACCCTAAGCTCAATGAAAGAATTCTGTCTTCTCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGGGCCAGGAGCTCCAGCAGTTTTCAACTGTGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTCTAATGCAGGAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTCCGCCATTACACAGACATCAAGGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAA

>Glyma11g07530.2   sequence type=CDS   gene model=Glyma11g07530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAACCTCACCCTAAGCTCAATGAAAGAATTCTGTCTTCTCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGGGCCAGGAGCTCCAGCAGTTTTCAACTGTGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTCTAATGCAGGAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTCCGCCATTACACAGACATCAAGGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTGTATCCTGTTATTTGCACTTATACATAAACCACATGCATCTCTGTACGAGTTATTGACAATTAATGATTAG

>Glyma11g07530.3   sequence type=CDS   gene model=Glyma11g07530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAACCTCACCCTAAGCTCAATGAAAGAATTCTGTCTTCTCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTAGAGATTGGGCCAGGAGCTCCAGCAGTTTTCAACTGTGTGGTTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTCTAATGCAGGAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTCCGCCATTACACAGACATCAAGGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAA

Predicted protein sequences of Glyma11g07530

Limit To All Plant Sequences

>Glyma11g07530.1   sequence type=predicted peptide   gene model=Glyma11g07530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHHEDSSAWNSSKPHPKLNERILSSLSRRTVAAHPWHDLEIGPGAPAVFNCVVEIGKGSKVKYELDKTSGLIKVDRILYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYTDIKELPPHRLAEIRRFFEDYKKNENKIVDVEDFLPAEAAIDAIKYSMDLYAAYIVESLRH*

>Glyma11g07530.2   sequence type=predicted peptide   gene model=Glyma11g07530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHHEDSSAWNSSKPHPKLNERILSSLSRRTVAAHPWHDLEIGPGAPAVFNCVVEIGKGSKVKYELDKTSGLIKVDRILYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYTDIKELPPHRLAEIRRFFEDCILLFALIHKPHASLYELLTIND*

>Glyma11g07530.3   sequence type=predicted peptide   gene model=Glyma11g07530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHHEDSSAWNSSKPHPKLNERILSSLSRRTVAAHPWHDLEIGPGAPAVFNCVVEIGKGSKVKYELDKTSGLIKVDRILYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYTDIKELPPHRLAEIRRFFEDYKKNENKIVDVEDFLPAEAAIDAIKYSMDLYAAYIVESLRH*

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