Glyma11g07496 - SoyBase

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Report for Sequence Feature Glyma11g07496

Feature Type:	gene_model
Chromosome:	Gm11
Start:	5254960
stop:	5257083
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g07496

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75280	AT	Annotation by Michelle Graham. TAIR10: NmrA-like negative transcriptional regulator family protein \| chr1:28252030-28253355 FORWARD LENGTH=310	SoyBase	E_val: 3.00E-144	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF62	Panther	EPIMERASE-RELATED	JGI		ISS
PF05368	PFAM	NmrA-like family	JGI		ISS
UniRef100_Q9SDZ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Isoflavone reductase homolog 1 n=1 Tax=Glycine max RepID=Q9SDZ1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SDZ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isoflavone reductase homolog 1 n=1 Tax=Glycine max RepID=Q9SDZ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g07496

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g07496 not represented in the dataset	Glyma11g07496 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g07496

Paralog	Evidence	Comments
Glyma01g37840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g07496 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g070300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g07496

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g07496

Limit To All Plant Sequences

>Glyma11g07496.1   sequence type=CDS   gene model=Glyma11g07496   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCAAAGAGCAAAATCCTAGTCATTGGAGGAACAGGATACATTGGAAAATTCATAGTTAAGGCAAGTTCAGAAGCAGGACACCCCACATTTGCCTTGGTTAGAGAAAGCACCCTTTCTCATCCTGAAAAATTTAAACTTATTGAGAGCTTCAAGACCTCTGGAGTTACTCTCCTTTATGGTGATCTTACTGATCATGAAAGCCTTGTTAAGGCAATCAAACAAGTTGATGTTGTAATCTCCGCATTAGGTGCAGAACAGATCGATGATCAAGTGAAGATCATAGCAGCAATAAAAGAAGCCGGAAACATCAAGAGGCTCCTCCCATCGGAATTTGGGCACGACGTGGATCATCACAATGCAGTGGAACCAGTGAGTAGCTTCTTCGAGAAAAAAGTGAAAATCCGAAGGGCAATTGAAGCTGAAGGAATTCCATACACTTACATCAGTTCAAATTCCTTTGCTGGACACTTCCTACCTAACTTGTTACAACAAAATGTCACAGCTCCTCCCAGGGATGAGGTTGTCATTCTAGGAGATGGAAACATCAAAGGAGTTTATGTTATCGAGGAAGATGTTGCGACTTATACCATAAAAGCAGTGGATGACCCAAGAACCTTGAACAAAACTCTGTACCTGAGACCCCATGCCAATGTTTTGACCTTCAACGAGCTCGTGTCCTTGTGGGAGAACAAGATTAAGAGCACCCTTGACAAAATCTACGTTCCAGAAGATCAACTTCTGAAGAGCATCCAGGAGTCTTCTTTCCCTGCCAATTTCATGCTAGCATTAGGCCACTCAATGCTGGTAAAGGGAGATTGTAACTATGAGATTGACCCTTCTTTCGGTGTGGAAGCTTCTAAACTTTATCCTGAGGTGAAATACACTACTGTCGACAACTATTTGAATGCGTTTGTCTGA

Predicted protein sequences of Glyma11g07496

Limit To All Plant Sequences

>Glyma11g07496.1   sequence type=predicted peptide   gene model=Glyma11g07496   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAKSKILVIGGTGYIGKFIVKASSEAGHPTFALVRESTLSHPEKFKLIESFKTSGVTLLYGDLTDHESLVKAIKQVDVVISALGAEQIDDQVKIIAAIKEAGNIKRLLPSEFGHDVDHHNAVEPVSSFFEKKVKIRRAIEAEGIPYTYISSNSFAGHFLPNLLQQNVTAPPRDEVVILGDGNIKGVYVIEEDVATYTIKAVDDPRTLNKTLYLRPHANVLTFNELVSLWENKIKSTLDKIYVPEDQLLKSIQESSFPANFMLALGHSMLVKGDCNYEIDPSFGVEASKLYPEVKYTTVDNYLNAFV*

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