SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G75280 | AT | Annotation by Michelle Graham. TAIR10: NmrA-like negative transcriptional regulator family protein | chr1:28252030-28253355 FORWARD LENGTH=310 | SoyBase | E_val: 2.00E-147 | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF62 | Panther | EPIMERASE-RELATED | JGI | ISS | |
| PF05368 | PFAM | NmrA-like family | JGI | ISS | |
| UniRef100_B7FHV0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Isoflavone reductase-like protein n=1 Tax=Medicago truncatula RepID=B7FHV0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LHU4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHU4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g07490 not represented in the dataset |
Glyma11g07490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g37850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g070200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g07490.2 sequence type=transcript gene model=Glyma11g07490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGTTTTTAGGCAACATGTTGGGACTGCCATTCAAAATGATAGTAGTACTACTTGACCTCCCCAAATTGGAACTACCATTCAAAATGACACCTTACTTCCCCAAATTGGATTTGAAGTCTATAATACCTTTTGCTGAGAACCTGAAGTCTGAACTGCTAGGTGGCATAATTGCTCTTTTTATCGTTGGCCTTACTTATATTTACTATCGCATGAAAAAACCCAAAGCCAAGAGCAAAATCCTAGTCCTTGGAGGAACAGGATACATTGGAAAATTCATAGTTAAGGCAAGCGCAGAAGCAGGACACCCCACTTTTGCCTTAGTTAGAGAGAGCACCCTTTCTCATCCTGAAAAATCTAAACTTATTGAGAGCTTCAAGACCTCCGGAGTTACTCTTCTTTATGGTGATCTAACTGATCATGAAAGCCTTGTTAAGGCTATCAAGCAAGTTGATGTTGTGATTTCTACACTAGGTGGACAACAAATTGATGATCAAGTGAAGCTCATAGCCGCTGTAAAAGAAGCTGGAAACATCAAGAGGTTCCTCCCATCTGAATTCGGGCTTGATGTGGAGCGTCACAATGCAGTTGAGCCAGTGACCAGCTTTCTTGAGAAAAAAGTGAAAATCCGAAGGGCAATTGAAGCTGAAGGAATCCCATATACTTATATATGTTCAAATGCCTTTGCTGGTTACTTCTTACCTACACTTGGACAACAAAATGTCACAGCTCCTCCCAGGGATAAGGTTGTCATTCTAGGAGATGGAAACGTCAAAGCTGTTTATGTGAAGGAGGAAGACATTGGGACTTATACCATAAAAGCAGTGGATGACCCAAGAACCTTGAACAAAACTCTGTACGTGAGACCCCCTGCAAATGTTTTGACCTTCAACGAGCTCGTGTCGTTGTGGGAGAACAAGATTAAGAGTACCCTTGAGAAAGTCTACATTCCAGAAGATCAACTTCTTAAGTACATCCAGGAGTCTCCTTTCCCTGCTAATTTGATGTTGGCATTAGGCCACTCAATGCATGTAAAGGGTGATTGTACAAACTATGAGATTGACCCTTCTTTCGGGGTGGAAGCTTCTAACCTTTATCCTGAGGTGAAATACACTACTGTCGACAACTATTTGAATGCGTTTGTCTGAAGTCCAGAGAATGCGTTATCATCAATAAACTGCTCTACCTAAGCTGATCAATAAAATCAGAGCATCTTGTTTATTGCTCAAGAATTTGTACCTTGTCCCTTATTGTCGTTCGCTACTTCGCTTAGCTTGGCACTGCTTGAAAGTTCTTCTAATATTAAAGTTCTATTACTATTTGTTTTGGTGTGAATGTGATATTTCTAAGGTCCTTATCAGGTTGTTTACGGTTGAATTTGAATCAAATGTTAGACAAAAAAAAATCCGTTTGTTTGATTTTTATA
>Glyma11g07490.1 sequence type=CDS gene model=Glyma11g07490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCCAAGAGCAAAATCCTAGTCCTTGGAGGAACAGGATACATTGGAAAATTCATAGTTAAGGCAAGCGCAGAAGCAGGACACCCCACTTTTGCCTTAGTTAGAGAGAGCACCCTTTCTCATCCTGAAAAATCTAAACTTATTGAGAGCTTCAAGACCTCCGGAGTTACTCTTCTTTATGGTGATCTAACTGATCATGAAAGCCTTGTTAAGGCTATCAAGCAAGTTGATGTTGTGATTTCTACACTAGGTGGACAACAAATTGATGATCAAGTGAAGCTCATAGCCGCTGTAAAAGAAGCTGGAAACATCAAGAGGTTCCTCCCATCTGAATTCGGGCTTGATGTGGAGCGTCACAATGCAGTTGAGCCAGTGACCAGCTTTCTTGAGAAAAAAGTGAAAATCCGAAGGGCAATTGAAGCTGAAGGAATCCCATATACTTATATATGTTCAAATGCCTTTGCTGGTTACTTCTTACCTACACTTGGACAACAAAATGTCACAGCTCCTCCCAGGGATAAGGTTGTCATTCTAGGAGATGGAAACGTCAAAGCTGTTTATGTGAAGGAGGAAGACATTGGGACTTATACCATAAAAGCAGTGGATGACCCAAGAACCTTGAACAAAACTCTGTACGTGAGACCCCCTGCAAATGTTTTGACCTTCAACGAGCTCGTGTCGTTGTGGGAGAACAAGATTAAGAGTACCCTTGAGAAAGTCTACATTCCAGAAGATCAACTTCTTAAGTACATCCAGGAGTCTCCTTTCCCTGCTAATTTGATGTTGGCATTAGGCCACTCAATGCATGTAAAGGGTGATTGTACAAACTATGAGATTGACCCTTCTTTCGGGGTGGAAGCTTCTAACCTTTATCCTGAGGTGAAATACACTACTGTCGACAACTATTTGAATGCGTTTGTCTGA >Glyma11g07490.2 sequence type=CDS gene model=Glyma11g07490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGGGACTGCCATTCAAAATGATAGTAGTACTACTTGACCTCCCCAAATTGGAACTACCATTCAAAATGACACCTTACTTCCCCAAATTGGATTTGAAGTCTATAATACCTTTTGCTGAGAACCTGAAGTCTGAACTGCTAGGTGGCATAATTGCTCTTTTTATCGTTGGCCTTACTTATATTTACTATCGCATGAAAAAACCCAAAGCCAAGAGCAAAATCCTAGTCCTTGGAGGAACAGGATACATTGGAAAATTCATAGTTAAGGCAAGCGCAGAAGCAGGACACCCCACTTTTGCCTTAGTTAGAGAGAGCACCCTTTCTCATCCTGAAAAATCTAAACTTATTGAGAGCTTCAAGACCTCCGGAGTTACTCTTCTTTATGGTGATCTAACTGATCATGAAAGCCTTGTTAAGGCTATCAAGCAAGTTGATGTTGTGATTTCTACACTAGGTGGACAACAAATTGATGATCAAGTGAAGCTCATAGCCGCTGTAAAAGAAGCTGGAAACATCAAGAGGTTCCTCCCATCTGAATTCGGGCTTGATGTGGAGCGTCACAATGCAGTTGAGCCAGTGACCAGCTTTCTTGAGAAAAAAGTGAAAATCCGAAGGGCAATTGAAGCTGAAGGAATCCCATATACTTATATATGTTCAAATGCCTTTGCTGGTTACTTCTTACCTACACTTGGACAACAAAATGTCACAGCTCCTCCCAGGGATAAGGTTGTCATTCTAGGAGATGGAAACGTCAAAGCTGTTTATGTGAAGGAGGAAGACATTGGGACTTATACCATAAAAGCAGTGGATGACCCAAGAACCTTGAACAAAACTCTGTACGTGAGACCCCCTGCAAATGTTTTGACCTTCAACGAGCTCGTGTCGTTGTGGGAGAACAAGATTAAGAGTACCCTTGAGAAAGTCTACATTCCAGAAGATCAACTTCTTAAGTACATCCAGGAGTCTCCTTTCCCTGCTAATTTGATGTTGGCATTAGGCCACTCAATGCATGTAAAGGGTGATTGTACAAACTATGAGATTGACCCTTCTTTCGGGGTGGAAGCTTCTAACCTTTATCCTGAGGTGAAATACACTACTGTCGACAACTATTTGAATGCGTTTGTCTGA
>Glyma11g07490.1 sequence type=predicted peptide gene model=Glyma11g07490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAKSKILVLGGTGYIGKFIVKASAEAGHPTFALVRESTLSHPEKSKLIESFKTSGVTLLYGDLTDHESLVKAIKQVDVVISTLGGQQIDDQVKLIAAVKEAGNIKRFLPSEFGLDVERHNAVEPVTSFLEKKVKIRRAIEAEGIPYTYICSNAFAGYFLPTLGQQNVTAPPRDKVVILGDGNVKAVYVKEEDIGTYTIKAVDDPRTLNKTLYVRPPANVLTFNELVSLWENKIKSTLEKVYIPEDQLLKYIQESPFPANLMLALGHSMHVKGDCTNYEIDPSFGVEASNLYPEVKYTTVDNYLNAFV* >Glyma11g07490.2 sequence type=predicted peptide gene model=Glyma11g07490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLGLPFKMIVVLLDLPKLELPFKMTPYFPKLDLKSIIPFAENLKSELLGGIIALFIVGLTYIYYRMKKPKAKSKILVLGGTGYIGKFIVKASAEAGHPTFALVRESTLSHPEKSKLIESFKTSGVTLLYGDLTDHESLVKAIKQVDVVISTLGGQQIDDQVKLIAAVKEAGNIKRFLPSEFGLDVERHNAVEPVTSFLEKKVKIRRAIEAEGIPYTYICSNAFAGYFLPTLGQQNVTAPPRDKVVILGDGNVKAVYVKEEDIGTYTIKAVDDPRTLNKTLYVRPPANVLTFNELVSLWENKIKSTLEKVYIPEDQLLKYIQESPFPANLMLALGHSMHVKGDCTNYEIDPSFGVEASNLYPEVKYTTVDNYLNAFV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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