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Report for Sequence Feature Glyma11g07430

Feature Type:gene_model
Chromosome:Gm11
Start:5228047
stop:5230617
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g07430
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03260AT Annotation by Michelle Graham. TAIR10: laccase 11 | chr5:777198-779338 REVERSE LENGTH=557 SoyBaseE_val: 0ISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0046274GO-bp Annotation by Michelle Graham. GO Biological Process: lignin catabolic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0052716GO-mf Annotation by Michelle Graham. GO Molecular Function: hydroquinone:oxygen oxidoreductase activity SoyBaseN/AISS
KOG1263 KOG Multicopper oxidases JGI ISS
PTHR11709Panther MULTI-COPPER OXIDASE JGI ISS
PTHR11709:SF9Panther LACCASE JGI ISS
PF00394PFAM Multicopper oxidase JGI ISS
PF07731PFAM Multicopper oxidase JGI ISS
PF07732PFAM Multicopper oxidase JGI ISS
UniRef100_G7KEX5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Laccase-11 n=1 Tax=Medicago truncatula RepID=G7KEX5_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LHT8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LHT8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g07430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g07430
ParalogEvidenceComments
Glyma01g37920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g07430 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g069600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g07430
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g07430
>Glyma11g07430.1   sequence type=CDS   gene model=Glyma11g07430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGCTTGGGGTGTTCCATGTCTGTCTTAACGTTTCTCTTCTTCATCTTTGTTGGCTTAATGTCTTCTTCATCTGAAGCTGCCATAAAGAGATACCAGTTTGATATTCAAGTGACGAATGTGAGTAGACTATGCCATGCAAAGCCTATTGTAACAGTAAATGGGAGGTTCCCAGGGCCAACTATATATGTTAGGGAAGGAGATAGAGTGATGATCAATGTCACCAATCATGTACAATACAACATGTCGATTCACTGGCATGGACTTAAACAATATCGTAATGGTTGGGCGGATGGACCAGCTTATATCACACAGTGCCCAATACAGACAGGAGGCAGTTATACTTATGATTTCAATGTTACTGAGCAGAGAGGAACACTATGGTGGCATGCACACATTCTTTGGCTGAGGGCCACTGTGTATGGTGCAATAGTAATTATGCCTAAAGCTGGAACACCATTTCCTTTCCCACAGCCAGCTAGAGAATTTGAAATTCTCCTAGGTGAATGGTGGAACAACGACGTGGAAGAGATTGAAAATCAAGGGAACAAAATGGGGTTGCCACCAAATATGTCAGATGCACATACGATCAATGGGAAGCCAGGACCACTATTCCCATGTTCTGAGAAGCACACATTTGCAATGGAGGTAGAACAAGGGAAGACTTACCTCCTGAGAATCATCAATGCTGCCCTGAATGACGAACTTTTCTTTGCCATTGCCCATCACAATTTGACAGTAGTGGAGGTTGATGCTGTTTATACGAAACCATTCACCACTCGGGCTATACTAATTGCACCTGGTCAAACCACAAACGTTCTGGTCCAAGCCAACCAAGTTGCTGGTAGATACTTCATGGCCACCAAGGCTTTTATGGATGCTCCAATCCCAGTTGACAACAAAACTGCCACAGCTATACTCCAATACAAAGGCATCCCAAACACTGTCCTCCCCGTCCTTCCACAGTTGCCGGCTAGAAACGACACACGTTTTGCTTTGAGTTACAACAAGAAATTAAGGAGCCTAAACTCTACTCAATACCCTGCTAATGTTCCTCTCAAAGTTGACAGAAACCTCTTCTACACTATTGGTTTAGGCCAGAATGCTTGCCCCACATGCCTAAATGGAACCCGGCTCGTTGCTTCATTAAACAATGTATCTTTTGTGATGCCCCAAACTGCACTTCTCCAAGCTCACTACTTCAGTATCAGGGGGGTTTTCAGGACTGATTTTCCTGACCGCCCTCCATCCCCTTTCAACTTTACTGGTGCGCCCCTAACTGCCAATCTTGCCACTTTAACTGGCACTAGAGTTAGCAAGATTGCTTTCAATTCCACAGTGGAGCTAGTTTTGCAGGATACCAATCTCCTCTCTGTTGAGTCACATCCATTCCATCTTCATGGCTATAACTTTTTTGTTGTTGGAACCGGGATTGGTAACTTTGATCCAGCTAAAGACCCTGCTAAGTACAACTTGGTAGATCCTATTGAGAGGAACACAGTTGGGGTTCCTACCGGTGGTTGGACTGCAATTCGTTTTCGGGCAGATAATCCAGGTGTTTGGTTTATGCATTGTCATTTGGAGGTGCATACTGGTTGGGGGTTGAAAACGGCTTTTGTTGTGGAAAATGGACAAGGACAAGATCAATCTGTTCTGCCTCCACCAAAGGACCTTCCGACTTGCTAG
Predicted protein sequences of Glyma11g07430
>Glyma11g07430.1   sequence type=predicted peptide   gene model=Glyma11g07430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLGCSMSVLTFLFFIFVGLMSSSSEAAIKRYQFDIQVTNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVMINVTNHVQYNMSIHWHGLKQYRNGWADGPAYITQCPIQTGGSYTYDFNVTEQRGTLWWHAHILWLRATVYGAIVIMPKAGTPFPFPQPAREFEILLGEWWNNDVEEIENQGNKMGLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVEQGKTYLLRIINAALNDELFFAIAHHNLTVVEVDAVYTKPFTTRAILIAPGQTTNVLVQANQVAGRYFMATKAFMDAPIPVDNKTATAILQYKGIPNTVLPVLPQLPARNDTRFALSYNKKLRSLNSTQYPANVPLKVDRNLFYTIGLGQNACPTCLNGTRLVASLNNVSFVMPQTALLQAHYFSIRGVFRTDFPDRPPSPFNFTGAPLTANLATLTGTRVSKIAFNSTVELVLQDTNLLSVESHPFHLHGYNFFVVGTGIGNFDPAKDPAKYNLVDPIERNTVGVPTGGWTAIRFRADNPGVWFMHCHLEVHTGWGLKTAFVVENGQGQDQSVLPPPKDLPTC*






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