SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36550 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr4:17245400-17247926 REVERSE LENGTH=718 | SoyBase | E_val: 9.00E-148 | ISS |
| GO:0001666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hypoxia | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0000151 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0005871 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: kinesin complex | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0019894 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinesin binding | SoyBase | N/A | ISS |
| PTHR22849 | Panther | WDSAM1 PROTEIN | JGI | ISS | |
| PF04564 | PFAM | U-box domain | JGI | ISS | |
| PF05804 | PFAM | Kinesin-associated protein (KAP) | JGI | ISS | |
| UniRef100_G7KEW9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=2 Tax=Medicago truncatula RepID=G7KEW9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D2B7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D2B7 related cluster n=1 Tax=unknown RepID=UPI000233D2B7 | SoyBase | E_val: 0 | ISS |
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Glyma11g07400 not represented in the dataset |
Glyma11g07400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g37950 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g069300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g07400.3 sequence type=transcript gene model=Glyma11g07400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTACAAAAGACACAGACATGGTAAGGTTTGTTTTCCCGTTTGGTCGACTTGGTCAAGGAAAAGGAAAATCCTAGACTCGAAAACTCAACAAATGCAACTAATAATAAGTAGTCGCGGAAACAAAAAATCACGTTGACGGGTCTTTCTTTCTCTCTCGATACTACTATTCCCTGTTGCTAAGACTTTTTTATTTGTTTGTTTTCATAATTGATTATGCTTTTCTCAGCCACGCTTGCTTTGCTTTCGCTGAAGATTATCCTCACCTTTCTTTTGTTTTTTTAATCAATCTTTCTCGTCAAGTCTCAGGTTTTGTTCTTTACTCAATTGCGTTCCCCCCCCCCCCCCCCCTCTCTCCTTAGTGCTGATTTTTGTGGGTATGGAACACTTAATATTTTTGTGGTAGAGCAGAAAAGAGAAAATACATGCTACTTTTTCACCTCCACAGAGATTGATTCAGATTCCATATAAAGTTTTCGTTTTGTTCATGAGCTTGCTTATCTATGGCGGAAACACGCTGCTTAATGTTAAATTCGTGGTGATTTTATTGCTGCTTATTAGCACTCTGTATCTGATCGGTTGAAGGGAGAAGAAGAAAAGGACTTTCTTCTGTAGAATTCTTTCTCTTCTAATTTGTAGCTCTGCTGGGACACTCTCCTGATGGTAACTGATATTGGTGAAGGGGAAGAGTTACAAAATCCCCGCTCCTTTAAGGTGCATAGTAAAATCTGCACAGAACTCACAGAATTAGTGGATAGAATCTCAAGAATAGTTCCAGACATAGAGGCGGCACGGCCAGGATACTCTTCAGGAATAGAGTCTCTATGTTTGCTGAACAATGCAATTGATAAAGTCAAACTACTTCTGCAACATTGCTCCGAATGTAGCAAATTCTACCTGGCTATGACAGGAGATACAGTACTCTCAAGATGCCTAAAGGCAACAAGATCATTAGAGAAAAGCTTAATCCAAATTCAAGATATGGTTCCTGTTATGTTGGCTGTAGAGGTTTCTAGAATAATTCATGATCTAGAATGTACAAGACTTGTTCTGGACCCTAATGAAGAAAAGGCTGGGAGGGTTGTGAGAGAGTTGCTTACTTTAACCTCAGATTCAGCTGATGATTCTGAAGTTAAAGCTCTTCAGTTTGCAGCATCTACACTGAATATAACATCCCCAAAGGCCATCTTAATAGAGCAACGATCTATTAAGAAGTTGTTAGATAAACTTGGACCCAATGACCTCCCAAAGAAGAAGATACTGAGATATCTTCTGTATCTACTGAAAAAGCATGGAAAGCTCATGGTGGGGGAACATGTGGAGGAGGTCTATTCTCGTTCTGAGGAACAAGCTGCAACAGAGAACTCGAATCACGATTCCCTACGAAGCCATCATGTTGATTCAGACACAATCTTGAAGTATGGTCAGTATAAAACTCACACCAATGAGTTAAGTGGAGTTGCACCACTTGAGGAATATAAGTGCCCAATATCCTCAAGGTTGATGTATGATCCTGTTATCATTGATTCAGGAGTAACATATGAAAGAATGTGGATAAAAAAGTGGTTTGATGAGGGTAATGACATATGTCCCAAAACCAGAAAGAAACTAGTCCATATGGGATTAACTCCAAACATGGCCATGAAAGACTTAATATCAAAGTGGTGCAGAAATAATGGAGTCTCCATTCCAGACCCTAGTAGGCATGCAGAAGATATTTGTGCATGGGAAGCTTCAAACACTTCCATTAGCAGCTTAGGAAGTTATTTCAATGATTTCACCGCACCAGTGGATCTTAGTAGCATGTCAATTGGGCCATTGGATACTAGTTTCAGTTTAGATGCCTCACATGGTAAGACCACTCGTGGCTCAAATTTGATGCAGACCAAGAGCCGTGACAATTCTCACAAACATCAGGCTCATACAGAGATACATGATACTGATTTGATGCTCTTGCCTCAACTCTGTGATCTTCAATGGGATTCTCAATGCAAGGTCATTCAAGATTTGAAAGATAATTTGAAAAGCAATAGCCAAGCTTTTGTTTCTGTATCAGCAGAGAATTTCATCGAACCACTCGTCAGGTTTCTGAGCAATGCATATGATCTGCGTGATATTAAAGCACTGAGAGCTGGAACTCAGCTTCTGTTGGAGTTTGTGAACAACTGCAGAAATGGTACGACTAATTTGAATGAAGATACTTTCATTATGTTGGCAAGTTTTCTCAATTCAGATGTGATTGGAGAAACTCTTGCCATAATGGAAGAACTGTCAGGATATGGGTTTAGTAAAGCTAAAATTGCAGCATCCAGTGCTCTCAGTTCTATTCTAAACATGCTTGATTCTGAAAACAAAGGTTTCCAACAGCAAGCTATTAGAATAATGTACAACTTGTCCTTCAGTGGTGAAGTTTGTCCCCGCATGCTATCTCTCAGGCAATAACGAGGAACAAGAACATGCGCTGGCTGTTCTAGTCTCTCTATGTTCTCAACATGTGGATTATTGTAAGTTGGTAATGCGTGAGGATGAGCATATCATAAGTCTTCTTATCTATATCTCACAGAATGGAAATGACAGAGGAAAAGGAAGTGCATTGGAATTGCTTCATCTTTTGAAAGATATTGACATTGCTGAGAATGAAGGTTGTCCTGAGCCAAATATCAACAACTCTTCTCGAGATTCTAACAGTTACCACCCTGAAGAAAATCAACCATCAAAGAAATCCACGTTTCTGAAGAAACTATCACCGTTCTCAAAGTCCAGTTCACATGCATCAAAAACCAAAAGATGACAATGAATTTCTCTGCATTTTGTAGCACTTATTTGTGGCATTTTTAGCTTTGAAGATTCAATCGCAAAGCATCTGCTACTTAATTTTGCAGAGTAACAACAGGTAGTATGATGATGTGTATATAGTTGTGCTTATGAGTTTTGAGATTCTGATTTAGGGCCTGTTAAAGTCGACAGTTTTCTGACTTCTCTTTTCCTTCCTGTCAACATACTAGCTAGGTAGACCAATTACACATTTCTTGTTTATTCATATTGTGTATATATATTTAACACTTTGCAGTATTTGGCTACTACTGTAAAATAGATATTAGTGTAATAAAGGTGCTTGCCAATATTTTTTTAACTTAATTTATTTATC
>Glyma11g07400.2 sequence type=CDS gene model=Glyma11g07400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTAACTGATATTGGTGAAGGGGAAGAGTTACAAAATCCCCGCTCCTTTAAGGTGCATAGTAAAATCTGCACAGAACTCACAGAATTAGTGGATAGAATCTCAAGAATAGTTCCAGACATAGAGGCGGCACGGCCAGGATACTCTTCAGGAATAGAGTCTCTATGTTTGCTGAACAATGCAATTGATAAAGTCAAACTACTTCTGCAACATTGCTCCGAATGTAGCAAATTCTACCTGGCTATGACAGGAGATACAGTACTCTCAAGATGCCTAAAGGCAACAAGATCATTAGAGAAAAGCTTAATCCAAATTCAAGATATGGTTCCTGTTATGTTGGCTGTAGAGGTTTCTAGAATAATTCATGATCTAGAATGTACAAGACTTGTTCTGGACCCTAATGAAGAAAAGGCTGGGAGGGTTGTGAGAGAGTTGCTTACTTTAACCTCAGATTCAGCTGATGATTCTGAAGTTAAAGCTCTTCAGTTTGCAGCATCTACACTGAATATAACATCCCCAAAGGCCATCTTAATAGAGCAACGATCTATTAAGAAGTTGTTAGATAAACTTGGACCCAATGACCTCCCAAAGAAGAAGATACTGAGATATCTTCTGTATCTACTGAAAAAGCATGGAAAGCTCATGGTGGGGGAACATGTGGAGGAGGTCTATTCTCGTTCTGAGGAACAAGCTGCAACAGAGAACTCGAATCACGATTCCCTACGAAGCCATCATGTTGATTCAGACACAATCTTGAAGTATGGTCAGTATAAAACTCACACCAATGAGTTAAGTGGAGTTGCACCACTTGAGGAATATAAGTGCCCAATATCCTCAAGGTTGATGTATGATCCTGTTATCATTGATTCAGGAGTAACATATGAAAGAATGTGGATAAAAAAGTGGTTTGATGAGGGTAATGACATATGTCCCAAAACCAGAAAGAAACTAGTCCATATGGGATTAACTCCAAACATGGCCATGAAAGACTTAATATCAAAGTGGTGCAGAAATAATGGAGTCTCCATTCCAGACCCTAGTAGGCATGCAGAAGATATTTGTGCATGGGAAGCTTCAAACACTTCCATTAGCAGCTTAGGAAGTTATTTCAATGATTTCACCGCACCAGTGGATCTTAGTAGCATGTCAATTGGGCCATTGGATACTAGTTTCAGTTTAGATGCCTCACATGGTAAGACCACTCGTGGCTCAAATTTGATGCAGACCAAGAGCCGTGACAATTCTCACAAACATCAGGCTCATACAGAGATACATGATACTGATTTGATGCTCTTGCCTCAACTCTGTGATCTTCAATGGGATTCTCAATGCAAGGTCATTCAAGATTTGAAAGATAATTTGAAAAGCAATAGCCAAGCTTTTGTTTCTGTATCAGCAGAGAATTTCATCGAACCACTCGTCAGGTTTCTGAGCAATGCATATGATCTGCGTGATATTAAAGCACTGAGAGCTGGAACTCAGCTTCTGTTGGAGTTTGTGAACAACTGCAGAAATGGTACGACTAATTTGAATGAAGATACTTTCATTATGTTGGCAAGTTTTCTCAATTCAGATGTGATTGGAGAAACTCTTGCCATAATGGAAGAACTGTCAGGATATGGGTTTAGTAAAGCTAAAATTGCAGCATCCAGTGCTCTCAGTTCTATTCTAAACATGCTTGATTCTGAAAACAAAGGTTTCCAACAGCAAGCTATTAGAATAATGTACAACTTGTCCTTCAGTGGTGAAGTTTGTCCCCGCATGCTATCTCTCAGGTGCATCCCAAAATTGCTGCCATTTTTTAAAGACAGAACCCTTTTGAGATACTGTATATATATATTGAAAAATCTTTGTGACACTGAAGAGGGTAGGAAATCTGTTTCTGAAACAAAGGGATGCTTATCTTCTGTTGCTGAAATACTTGATACAGGCAATAACGAGGAACAAGAACATGCGCTGGCTGTTCTAGTCTCTCTATGTTCTCAACATGTGGATTATTGTAAGTTGGTAATGCGTGAGGATGAGCATATCATAAGTCTTCTTATCTATATCTCACAGAATGGAAATGACAGAGGAAAAGGAAGTGCATTGGAATTGCTTCATCTTTTGAAAGATATTGACATTGCTGAGAATGAAGGTTGTCCTGAGCCAAATATCAACAACTCTTCTCGAGATTCTAACAGTTACCACCCTGAAGAAAATCAACCATCAAAGAAATCCACGTTTCTGAAGAAACTATCACCGTTCTCAAAGTCCAGTTCACATGCATCAAAAACCAAAAGATGA >Glyma11g07400.3 sequence type=CDS gene model=Glyma11g07400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTAACTGATATTGGTGAAGGGGAAGAGTTACAAAATCCCCGCTCCTTTAAGGTGCATAGTAAAATCTGCACAGAACTCACAGAATTAGTGGATAGAATCTCAAGAATAGTTCCAGACATAGAGGCGGCACGGCCAGGATACTCTTCAGGAATAGAGTCTCTATGTTTGCTGAACAATGCAATTGATAAAGTCAAACTACTTCTGCAACATTGCTCCGAATGTAGCAAATTCTACCTGGCTATGACAGGAGATACAGTACTCTCAAGATGCCTAAAGGCAACAAGATCATTAGAGAAAAGCTTAATCCAAATTCAAGATATGGTTCCTGTTATGTTGGCTGTAGAGGTTTCTAGAATAATTCATGATCTAGAATGTACAAGACTTGTTCTGGACCCTAATGAAGAAAAGGCTGGGAGGGTTGTGAGAGAGTTGCTTACTTTAACCTCAGATTCAGCTGATGATTCTGAAGTTAAAGCTCTTCAGTTTGCAGCATCTACACTGAATATAACATCCCCAAAGGCCATCTTAATAGAGCAACGATCTATTAAGAAGTTGTTAGATAAACTTGGACCCAATGACCTCCCAAAGAAGAAGATACTGAGATATCTTCTGTATCTACTGAAAAAGCATGGAAAGCTCATGGTGGGGGAACATGTGGAGGAGGTCTATTCTCGTTCTGAGGAACAAGCTGCAACAGAGAACTCGAATCACGATTCCCTACGAAGCCATCATGTTGATTCAGACACAATCTTGAAGTATGGTCAGTATAAAACTCACACCAATGAGTTAAGTGGAGTTGCACCACTTGAGGAATATAAGTGCCCAATATCCTCAAGGTTGATGTATGATCCTGTTATCATTGATTCAGGAGTAACATATGAAAGAATGTGGATAAAAAAGTGGTTTGATGAGGGTAATGACATATGTCCCAAAACCAGAAAGAAACTAGTCCATATGGGATTAACTCCAAACATGGCCATGAAAGACTTAATATCAAAGTGGTGCAGAAATAATGGAGTCTCCATTCCAGACCCTAGTAGGCATGCAGAAGATATTTGTGCATGGGAAGCTTCAAACACTTCCATTAGCAGCTTAGGAAGTTATTTCAATGATTTCACCGCACCAGTGGATCTTAGTAGCATGTCAATTGGGCCATTGGATACTAGTTTCAGTTTAGATGCCTCACATGGTAAGACCACTCGTGGCTCAAATTTGATGCAGACCAAGAGCCGTGACAATTCTCACAAACATCAGGCTCATACAGAGATACATGATACTGATTTGATGCTCTTGCCTCAACTCTGTGATCTTCAATGGGATTCTCAATGCAAGGTCATTCAAGATTTGAAAGATAATTTGAAAAGCAATAGCCAAGCTTTTGTTTCTGTATCAGCAGAGAATTTCATCGAACCACTCGTCAGGTTTCTGAGCAATGCATATGATCTGCGTGATATTAAAGCACTGAGAGCTGGAACTCAGCTTCTGTTGGAGTTTGTGAACAACTGCAGAAATGGTACGACTAATTTGAATGAAGATACTTTCATTATGTTGGCAAGTTTTCTCAATTCAGATGTGATTGGAGAAACTCTTGCCATAATGGAAGAACTGTCAGGATATGGGTTTAGTAAAGCTAAAATTGCAGCATCCAGTGCTCTCAGTTCTATTCTAAACATGCTTGATTCTGAAAACAAAGGTTTCCAACAGCAAGCTATTAGAATAATGTACAACTTGTCCTTCAGTGGTGAAGTTTGTCCCCGCATGCTATCTCTCAGGCAATAA
>Glyma11g07400.2 sequence type=predicted peptide gene model=Glyma11g07400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVTDIGEGEELQNPRSFKVHSKICTELTELVDRISRIVPDIEAARPGYSSGIESLCLLNNAIDKVKLLLQHCSECSKFYLAMTGDTVLSRCLKATRSLEKSLIQIQDMVPVMLAVEVSRIIHDLECTRLVLDPNEEKAGRVVRELLTLTSDSADDSEVKALQFAASTLNITSPKAILIEQRSIKKLLDKLGPNDLPKKKILRYLLYLLKKHGKLMVGEHVEEVYSRSEEQAATENSNHDSLRSHHVDSDTILKYGQYKTHTNELSGVAPLEEYKCPISSRLMYDPVIIDSGVTYERMWIKKWFDEGNDICPKTRKKLVHMGLTPNMAMKDLISKWCRNNGVSIPDPSRHAEDICAWEASNTSISSLGSYFNDFTAPVDLSSMSIGPLDTSFSLDASHGKTTRGSNLMQTKSRDNSHKHQAHTEIHDTDLMLLPQLCDLQWDSQCKVIQDLKDNLKSNSQAFVSVSAENFIEPLVRFLSNAYDLRDIKALRAGTQLLLEFVNNCRNGTTNLNEDTFIMLASFLNSDVIGETLAIMEELSGYGFSKAKIAASSALSSILNMLDSENKGFQQQAIRIMYNLSFSGEVCPRMLSLRCIPKLLPFFKDRTLLRYCIYILKNLCDTEEGRKSVSETKGCLSSVAEILDTGNNEEQEHALAVLVSLCSQHVDYCKLVMREDEHIISLLIYISQNGNDRGKGSALELLHLLKDIDIAENEGCPEPNINNSSRDSNSYHPEENQPSKKSTFLKKLSPFSKSSSHASKTKR* >Glyma11g07400.3 sequence type=predicted peptide gene model=Glyma11g07400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVTDIGEGEELQNPRSFKVHSKICTELTELVDRISRIVPDIEAARPGYSSGIESLCLLNNAIDKVKLLLQHCSECSKFYLAMTGDTVLSRCLKATRSLEKSLIQIQDMVPVMLAVEVSRIIHDLECTRLVLDPNEEKAGRVVRELLTLTSDSADDSEVKALQFAASTLNITSPKAILIEQRSIKKLLDKLGPNDLPKKKILRYLLYLLKKHGKLMVGEHVEEVYSRSEEQAATENSNHDSLRSHHVDSDTILKYGQYKTHTNELSGVAPLEEYKCPISSRLMYDPVIIDSGVTYERMWIKKWFDEGNDICPKTRKKLVHMGLTPNMAMKDLISKWCRNNGVSIPDPSRHAEDICAWEASNTSISSLGSYFNDFTAPVDLSSMSIGPLDTSFSLDASHGKTTRGSNLMQTKSRDNSHKHQAHTEIHDTDLMLLPQLCDLQWDSQCKVIQDLKDNLKSNSQAFVSVSAENFIEPLVRFLSNAYDLRDIKALRAGTQLLLEFVNNCRNGTTNLNEDTFIMLASFLNSDVIGETLAIMEELSGYGFSKAKIAASSALSSILNMLDSENKGFQQQAIRIMYNLSFSGEVCPRMLSLRQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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