Glyma11g07330 - SoyBase

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Report for Sequence Feature Glyma11g07330

Feature Type:	gene_model
Chromosome:	Gm11
Start:	5131818
stop:	5134420
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g07330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G18390	AT	Annotation by Michelle Graham. TAIR10: ADP-ribosylation factor family protein \| chr2:7988335-7989374 FORWARD LENGTH=185	SoyBase	E_val: 1.00E-111	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0007021	GO-bp	Annotation by Michelle Graham. GO Biological Process: tubulin complex assembly	SoyBase	N/A	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0009558	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac cellularization	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009960	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosperm development	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0073	KOG	GTP-binding ADP-ribosylation factor-like protein ARL2	JGI		ISS
PTHR11711	Panther	ARF-RELATED	JGI		ISS
PTHR11711:SF26	Panther	ADP-RIBOSYLATION FACTOR 3	JGI		ISS
PF00025	PFAM	ADP-ribosylation factor family	JGI		ISS
UniRef100_B7FHH1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor n=1 Tax=Medicago truncatula RepID=B7FHH1_MEDTR	SoyBase	E_val: 5.00E-111	ISS
UniRef100_I1LHS7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHS7_SOYBN	SoyBase	E_val: 1.00E-114	ISS

Expression Patterns of Glyma11g07330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g07330 not represented in the dataset	Glyma11g07330 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g07330

Paralog	Evidence	Comments
Glyma01g38270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g07330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g068500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g07330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g07330

Limit To All Plant Sequences

>Glyma11g07330.2   sequence type=transcript   gene model=Glyma11g07330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTCTATACTTTCTTTTCTTTACCCTAATGATAAAATAAAATACGATGCAAAGTGCTCACAGTAACCACTCTAACGTTGGACATATTTATCAGCGATTTATCACTGTCGAATTAAATCGAAGATTCAGAAAAAGAAAAGCATTTTACGTTCGAAGTCGAGTCGAAGAGTTTTGGGAGCCAAATGGGTCTTCTGAGCATCATAAGGAAAATCAAGCGGAAAGAGAAGGAAATGCGAATTCTAATGGTTTGTTGTTCTGCAGCGGATTGGACAATTCTGGGAAAACCACAATCGTTCTAAAGATAAACGGAGAGGACACAAGCGTCATCAGTCCCACGCTCGGCTTCAACATCAAAACCATAACTTACCAAAAGTATACCCTAAATATATGGGATGTTGGGGGCCAGAAAACAATAAGATCTTACTGGAGAAACTACTTTGAGCAAACAGATGGTTTGGTTTGGGTGGTTGACAGTTCAGATCTCAGAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAGAGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAAGGTGCCCTTACTCCTGAAGAAATAGCTAAGGTGCTGAACTTGGAAGCCATGGATAAATCTCGGCATTGGCAGATAGTTGGCTGTAGTGCATACACTGGTGAGGGTCTGCTTGAGGGATTTGATTGGTTGGTTCAGGACATAGCCTCTAGAATCTACATGCTTGACTGATGCTTGTTTGTGCCATCTTCCATGAAATGTGTCCCAACTTACAAGAGAATTCTCAAACCCAGTATGCTGCCTTTGGAAGACATTATGGATTCACTGCCTCACTGATATGTTCAAGGTGTTTTTTCTTCTTTTTTTTTTCTTTTTGGTGGGTGGGGTGATGGGGGTGCATGTAAAATTGATATTGGATTTTGAAGCGGCAAGATATTGGATTACTTGCGAGTTACTTACCTATCAATTATATATGAGAATTGGGAAGACTTGATTATGAACACTTGGAGGAATATGACTGTGTGAAGTACGTATTTTTAATCAAATTAAGTTCATGAACAGAAGCACAT

Coding sequences of Glyma11g07330

Limit To All Plant Sequences

>Glyma11g07330.1   sequence type=CDS   gene model=Glyma11g07330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCTTCTGAGCATCATAAGGAAAATCAAGCGGAAAGAGAAGGAAATGCGAATTCTAATGGTCGGATTGGACAATTCTGGGAAAACCACAATCGTTCTAAAGATAAACGGAGAGGACACAAGCGTCATCAGTCCCACGCTCGGCTTCAACATCAAAACCATAACTTACCAAAAGTATACCCTAAATATATGGGATGTTGGGGGCCAGAAAACAATAAGATCTTACTGGAGAAACTACTTTGAGCAAACAGATGGTTTGGTTTGGGTGGTTGACAGTTCAGATCTCAGAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAGAGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAAGGTGCCCTTACTCCTGAAGAAATAGCTAAGGTGCTGAACTTGGAAGCCATGGATAAATCTCGGCATTGGCAGATAGTTGGCTGTAGTGCATACACTGGTGAGGGTCTGCTTGAGGGATTTGATTGGTTGGTTCAGGACATAGCCTCTAGAATCTACATGCTTGACTGA

>Glyma11g07330.2   sequence type=CDS   gene model=Glyma11g07330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAGTGCTCACAGTAACCACTCTAACGTTGGACATATTTATCAGCGATTTATCACTGTCGAATTAAATCGAAGATTCAGAAAAAGAAAAGCATTTTACGTTCGAAGTCGAGTCGAAGAGTTTTGGGAGCCAAATGGGTCTTCTGAGCATCATAAGGAAAATCAAGCGGAAAGAGAAGGAAATGCGAATTCTAATGGTTTGTTGTTCTGCAGCGGATTGGACAATTCTGGGAAAACCACAATCGTTCTAAAGATAAACGGAGAGGACACAAGCGTCATCAGTCCCACGCTCGGCTTCAACATCAAAACCATAACTTACCAAAAGTATACCCTAAATATATGGGATGTTGGGGGCCAGAAAACAATAAGATCTTACTGGAGAAACTACTTTGAGCAAACAGATGGTTTGGTTTGGGTGGTTGACAGTTCAGATCTCAGAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAGAGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAAGGTGCCCTTACTCCTGAAGAAATAGCTAAGGTGCTGAACTTGGAAGCCATGGATAAATCTCGGCATTGGCAGATAGTTGGCTGTAGTGCATACACTGGTGAGGGTCTGCTTGAGGGATTTGATTGGTTGGTTCAGGACATAGCCTCTAGAATCTACATGCTTGACTGA

Predicted protein sequences of Glyma11g07330

Limit To All Plant Sequences

>Glyma11g07330.1   sequence type=predicted peptide   gene model=Glyma11g07330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKFELDNLLKEERLSGASLLILANKQDIKGALTPEEIAKVLNLEAMDKSRHWQIVGCSAYTGEGLLEGFDWLVQDIASRIYMLD*

>Glyma11g07330.2   sequence type=predicted peptide   gene model=Glyma11g07330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSAHSNHSNVGHIYQRFITVELNRRFRKRKAFYVRSRVEEFWEPNGSSEHHKENQAEREGNANSNGLLFCSGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKFELDNLLKEERLSGASLLILANKQDIKGALTPEEIAKVLNLEAMDKSRHWQIVGCSAYTGEGLLEGFDWLVQDIASRIYMLD*

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