SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66750 | AT | Annotation by Michelle Graham. TAIR10: chromatin remodeling 1 | chr5:26649050-26652869 FORWARD LENGTH=764 | SoyBase | E_val: 0 | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of chromatin silencing | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0006349 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of gene expression by genetic imprinting | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009294 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation | SoyBase | N/A | ISS |
| GO:0016246 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA interference | SoyBase | N/A | ISS |
| GO:0016572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone phosphorylation | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0032197 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transposition, RNA-mediated | SoyBase | N/A | ISS |
| GO:0044030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA methylation | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0051574 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0090241 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of histone H4 acetylation | SoyBase | N/A | ISS |
| GO:0000786 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleosome | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004003 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent DNA helicase activity | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| KOG0390 | KOG | DNA repair protein, SNF2 family | JGI | ISS | |
| PTHR10799 | Panther | ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED | JGI | ISS | |
| PF00176 | PFAM | SNF2 family N-terminal domain | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| UniRef100_B9HEW0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LHR4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHR4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g07220 not represented in the dataset |
Glyma11g07220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g38150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g067500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g07220.1 sequence type=CDS gene model=Glyma11g07220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGCGAAGAACAAAGTGAAGATCGATGATTCTACAGCGGAGTCTCCAACTTCGGTCCTTGAAGACGAGGCTGTCTGTGCCCCAAAAGAAGAAGTTAAGTTGGAGGAAGAAGTGACTGCAGACATCAAAGATGATGGGACCTCTCTTATATCGAAAACAATGGTGGAGGAGGAAGAGAATTTAATTGAAGCTAGGATGAAGGAAGAGGAGGTACAGTGTGAGGAGGTACCTGACCTTAATGACACACAGTTTAACAAATTGGATGAGCTTTTGACTCAAACCAAACTGTACTCTGAGTTTCTGCTGGAGAAAATGGACGACATCACACTTGCTGTGGGTGAACAAGAGAATAGGGAAGAGCAAGAGAGCAATCCTTCTGCAAAGAAGAAGGGCTGTGGATCAAAAAGAAAAGCTGCTTCCCAGTACAATACTAGGAAGGCCAAAAAGGCAGTCACTGCCATGCTGACAAGATCAGAAGAAAGTGAGAAGACTGAGGATACGAACATGACTGAGGAAGAAAGAGTTGAGAAAGAGCAAAAAGAGCTCATGCCCTTACTGACAGGTGGAAAATTGAAGACTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACGATTGGATTTCTCTCACATCTAAAAGCAAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTCTCAAACTGGGTGAACGAGATTTCTAGGTTTGCACCATCACTCCCTGCTGTTATCTACCATGGTGACAAGAAACAGAGAGATGAGATCCGGAGGAAACATATGCCTACTAGAACAATTGGCCCGGAATTTCCCATAGTCATAACTTCTTATGAGATTGCTTTAAATGATGCCAAGAAATATTTCAGGTCATACAATTGGAAATATATTGTTGTTGATGAGGGACACAGACTCAAAAACTCACAATGCAAATTAGTGAAGGCATTGAAATTCATAAATGTTGAAAACAAGCTTCTTTTAACTGGAACTCCTCTTCAGAATAACTTGGCTGAACTATGGTCTCTGTTGAACTTCATTTTGCCTGATATTTTTGCATCCCTTGAAGAGTTTGAGTCATGGTTTAATCTGTCAGGGAAGTGCAATAATGAAGCAACTAAGGAAGAACTGGAAGAGAAACGAAGATCCCAAGTTGTAGCAAAGCTTCATGCCATTCTTCGGCCCTTTCTTCTACGTAGGATGAAATCTGATGTTGAGATTATGTTGCCGCGGAAAAAGGAGATTATTATCTATGCAAACATGACTGAGCATCAGAAGAATTTGCAGGATCATTTAGTTAATAAGACGTTGGGGAACTATTTGAAAGAAAATATGTCAAGTGGACTTTCTGTTCCTGCAATTATGATTCGTAATTTGGCTATTCAACTTAGGAAGGTGTGTAACCATCCTGATCTCCTTGAGTCAGCATTTGATGATTCATATTTGTATCCTCCTTTGGAAGAGATAGTTGGACAATGTGGAAAATTCCATTTGCTTGATCGATTGCTGCAACGTTTATTTTCAAGGAATCACAAAGTTCTTATCTTCAGTCAGTGGACTAAAGTGTTAGATATAATGGATTATTATTTTAGTGAAAAAGGCTTTGCAGTTTGCAGGATTGATGGTAGTGTGAAACTGGAAGAGAGGAAACAACAGATCCAGGACTTCAATGATGTAAATAGCAATTGTAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGGTTGGGAATCAATCTCACTGTAGCTGATACATGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAAGCCATGGATAGATGTCATAGAATAGGCCAAACTAAACCTGTTCATGTTTACAGGCTCTCAACTGCCCAATCTATAGAGGGTCGCATGTTGAAAAGAGCTTTCAGCAAATTGAAGCTTGAGCATGTAGTGATTGAGAAAGGACAATTTCATCAAGAACGTACAAAACCTGCCAGTATGGATGAAATTGAGGAAGATGATGTTTTGGCATTGCTTCGTGATGAAGAAACAGCCGAAGATAAAAAGATACATACAGATATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGCAGTGATCTTATAGTCAACGACTCAAACGATGATAACTTCAAAGCTCCAGTCAGTGCCTTTCCTCTTAAAGGGCCGGGGTGGGAGGTGGTGATTCCAACTGCGACTGGGGGCATGCTCTCTACTCTTAACTGCTAG
>Glyma11g07220.1 sequence type=predicted peptide gene model=Glyma11g07220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEAKNKVKIDDSTAESPTSVLEDEAVCAPKEEVKLEEEVTADIKDDGTSLISKTMVEEEENLIEARMKEEEVQCEEVPDLNDTQFNKLDELLTQTKLYSEFLLEKMDDITLAVGEQENREEQESNPSAKKKGCGSKRKAASQYNTRKAKKAVTAMLTRSEESEKTEDTNMTEEERVEKEQKELMPLLTGGKLKTYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPAVIYHGDKKQRDEIRRKHMPTRTIGPEFPIVITSYEIALNDAKKYFRSYNWKYIVVDEGHRLKNSQCKLVKALKFINVENKLLLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSGKCNNEATKEELEEKRRSQVVAKLHAILRPFLLRRMKSDVEIMLPRKKEIIIYANMTEHQKNLQDHLVNKTLGNYLKENMSSGLSVPAIMIRNLAIQLRKVCNHPDLLESAFDDSYLYPPLEEIVGQCGKFHLLDRLLQRLFSRNHKVLIFSQWTKVLDIMDYYFSEKGFAVCRIDGSVKLEERKQQIQDFNDVNSNCRVFLLSTRAGGLGINLTVADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIEGRMLKRAFSKLKLEHVVIEKGQFHQERTKPASMDEIEEDDVLALLRDEETAEDKKIHTDISDEDLEKLLDRSDLIVNDSNDDNFKAPVSAFPLKGPGWEVVIPTATGGMLSTLNC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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