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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G50670 | AT | Annotation by Michelle Graham. TAIR10: U1 small nuclear ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE LENGTH=427 | SoyBase | E_val: 3.00E-158 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0030422 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0113 | KOG | U1 small nuclear ribonucleoprotein (RRM superfamily) | JGI | ISS | |
| PTHR13952 | Panther | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD | JGI | ISS | |
| PTHR13952:SF3 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| PF12220 | PFAM | U1 small nuclear ribonucleoprotein of 70kDa MW N terminal | JGI | ISS | |
| UniRef100_B9S6I9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LHR1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHR1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g07200 not represented in the dataset |
Glyma11g07200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g38120 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g067300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g07200.2 sequence type=transcript gene model=Glyma11g07200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTCATATAAATAACTCAGGGCGGTGGCTATGTCAAACTGAGAACTAAGATCCCGCTGGCGGTTGGCGCAACCTTTCGATCTTCATCCAACGGGGCAACGTTGGATCTGCTGAACTGAACTTCTTTTTATATGCACTCTGTGATTTCACTCTGCTTCGCCATCCTATGGGGGACAACAACAGCAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCCCGCACCAAAGCGCAGAACCGCTCCAACGTCCTTCAGCTCAAACTGATTGGACAGAGTCACCCAACCGGTCTCACAGCGAACCTGTTGAAGCTCTTCGAGCCTAGGCCTCCGTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAGGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACGCTCCACCTGTCCCAGAAACTGAGACTCCTGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTTGAGAAGGGAGCTGCAAAGGCTGCTGAGGAGCTTGAGAAATATGATCCACATAATGACCCAAATGTGTCGGGAGATCCATACAAGACATTGTTTGTGGCTAAACTCAGTTACGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTAGTTGCTGACAAAGATATAAATAAGCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCCCGTCGCTTAGGTGGTGGACTTGGTACCACTAGAGTTGGAGGTGAAGAAGTTAATCAGCGACATTCTGGGAGGGAGCAACAACAGTCTCGTTCTGAAGAACCGAGAGTGCGAGAGGACCGACACGCTGATAGGGAAATATCACGTGAAAGAGGTAGGGACAAAGACAGAGAACGGGAGCGATCACGTGAACATTCTCATGAAAGGGTCAGGGATCGTGATCATAGGGAGGATAGGCACCACAGAGACCGGGATAGGAACAGGGACAGAGACCGAGACAGGGAAAGAGATAGAGATCGTGGGCGTGATCGAGATAGAACACGGGACCGTGATCGTGAGCGAGGGAGGGACCGTGATCGGGATCGAGAATATGATCGACATCGTGAGAGGGATAGAGATTATGAAGTTGGTGACCCTGATCGAGGACGCTCACGTGATAGGGAGTCTGATTATGATCGTGTTGAATCTAAACATGGGGAAAGGAATCATGACTATGAACCTGAGGATGATCGTGGTAGGCATAACCAGTATGAACATGGACGTAGGCATGCAGACCCTGATCATGACCCTGAGCGGTATGACCACTACAATCATGGAGATGACCATGGTGACCATTACAATCAGTATCGTGACCATGATGGGATGGAAGATGACTACCATGCTGGACGTGCAACATCTGAATCGCATGAAAAGGAGAGAAGTCATGATGTGGACCGTGAATATCAACGCTCAGAGAGATCACATTCCCGGGAGTATGATTATTAGGACTTGGGCATAGTTCTTCTCAACTTTGTTGGTAAGATTTTATAATTTGGTATGTTTACTTTTGAATCTTGCTCACCTGCCGGTATTGGTAGTTGTTGAATGGATTAAGGCACAGTGTGATCATTAAAAAGAAAACTGTAGCTGCTGCTATCCATATGGCCCATATTTGAAAGCTGCCTTTTGTCAACGTGGACTTGGACATCTAATATTGGTATTTGTTTGGCATTTGTGTTGTTTTCTTCTGACATTTTATGAAATTAAACATCTAATATTGGTATTTGATTTTGGCATTTGTGTGGGTTCCAAGTTTTATTTGGTCTGTTGATCTGTCTGAGTTTGTGTTTACAATACAGAGCTTCCAGCATTATTTGTCCGTTTTCTTACGTTGGACACCAATTAATTATGTGACAGAACTTCTTCCAGGGTTATTTGAGGTTTGATTTTGATCGTCTGATTCGGTTTCATTCGTAAAACCCAATCAAAAGCGATTATTGGAGCTGACAGTAGTGAAATTAGCTACTTTGATTTCAATTGCGTTTTGAAAACAAATGCCATGGAAATTAATAGATCTGGGTTGCTTATATGCAAGCAATCGGTTCTTGTATAAGAACTCAACTCTATTTGTTCCAATGGTTAACATAAGAACTTTAAGAGTTCATAAAAATTGAGTTAATCAACCAACTCCAGCGAAGAGACTGTTATATTCGTCTTTTTTTCATTATCGAGGAAATAGAAAGGTTAGAAAATAATTTATAATTTTTGAACTATACAAATAATTGTCGTAAGATTTATACTTTTCTCGTCTTTTCTATTAATTTTTATAAGTGTAATAGTTTATTATTCATATCTTTTACTACCAAAAATTTTCATTTTTACAAACTAAATAAGATAACACTTTTTATGTGAGCATTAAACTAAATA
>Glyma11g07200.1 sequence type=CDS gene model=Glyma11g07200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGGACAACAACAGCAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCCCGCACCAAAGCGCAGAACCGCTCCAACGTCCTTCAGCTCAAACTGATTGGACAGAGTCACCCAACCGGTCTCACAGCGAACCTGTTGAAGCTCTTCGAGCCTAGGCCTCCGTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAGGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACGCTCCACCTGTCCCAGAAACTGAGACTCCTGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTTGAGAAGGGAGCTGCAAAGGCTGCTGAGGAGCTTGAGAAATATGATCCACATAATGACCCAAATGTGTCGGGAGATCCATACAAGACATTGTTTGTGGCTAAACTCAGTTACGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTAGTTGCTGACAAAGATATAAATAAGCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCCCGTCGCTTAGGTGGTGGACTTGGTACCACTAGAGTTGGAGGTGAAGAAGTTAATCAGCGACATTCTGGGAGGGAGCAACAACAGTCTCGTTCTGAAGAACCGAGAGTGCGAGAGGACCGACACGCTGATAGAGACAGGGAAATATCACGTGAAAGAGGTAGGGACAAAGACAGAGAACGGGAGCGATCACGTGAACATTCTCATGAAAGGGTCAGGGATCGTGATCATAGGGAGGATAGGCACCACAGAGACCGGGATAGGAACAGGGACAGAGACCGAGACAGGGAAAGAGATAGAGATCGTGGGCGTGATCGAGATAGAACACGGGACCGTGATCGTGAGCGAGGGAGGGACCGTGATCGGGATCGAGAATATGATCGACATCGTGAGAGGGATAGAGATTATGAAGTTGGTGACCCTGATCGAGGACGCTCACGTGATAGGGAGTCTGATTATGATCGTGTTGAATCTAAACATGGGGAAAGGAATCATGACTATGAACCTGAGGATGATCGTGGTAGGCATAACCAGTATGAACATGGACGTAGGCATGCAGACCCTGATCATGACCCTGAGCGGTATGACCACTACAATCATGGAGATGACCATGGTGACCATTACAATCAGTATCGTGACCATGATGGGATGGAAGATGACTACCATGCTGGACGTGCAACATCTGAATCGCATGAAAAGGAGAGAAGTCATGATGTGGACCGTGAATATCAACGCTCAGAGAGATCACATTCCCGGGAGTATGATTATTAG >Glyma11g07200.2 sequence type=CDS gene model=Glyma11g07200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGGACAACAACAGCAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCCCGCACCAAAGCGCAGAACCGCTCCAACGTCCTTCAGCTCAAACTGATTGGACAGAGTCACCCAACCGGTCTCACAGCGAACCTGTTGAAGCTCTTCGAGCCTAGGCCTCCGTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAGGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGAGCCAGAATACGCTCCACCTGTCCCAGAAACTGAGACTCCTGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTTGAGAAGGGAGCTGCAAAGGCTGCTGAGGAGCTTGAGAAATATGATCCACATAATGACCCAAATGTGTCGGGAGATCCATACAAGACATTGTTTGTGGCTAAACTCAGTTACGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTAGTTGCTGACAAAGATATAAATAAGCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCCCGTCGCTTAGGTGGTGGACTTGGTACCACTAGAGTTGGAGGTGAAGAAGTTAATCAGCGACATTCTGGGAGGGAGCAACAACAGTCTCGTTCTGAAGAACCGAGAGTGCGAGAGGACCGACACGCTGATAGGGAAATATCACGTGAAAGAGGTAGGGACAAAGACAGAGAACGGGAGCGATCACGTGAACATTCTCATGAAAGGGTCAGGGATCGTGATCATAGGGAGGATAGGCACCACAGAGACCGGGATAGGAACAGGGACAGAGACCGAGACAGGGAAAGAGATAGAGATCGTGGGCGTGATCGAGATAGAACACGGGACCGTGATCGTGAGCGAGGGAGGGACCGTGATCGGGATCGAGAATATGATCGACATCGTGAGAGGGATAGAGATTATGAAGTTGGTGACCCTGATCGAGGACGCTCACGTGATAGGGAGTCTGATTATGATCGTGTTGAATCTAAACATGGGGAAAGGAATCATGACTATGAACCTGAGGATGATCGTGGTAGGCATAACCAGTATGAACATGGACGTAGGCATGCAGACCCTGATCATGACCCTGAGCGGTATGACCACTACAATCATGGAGATGACCATGGTGACCATTACAATCAGTATCGTGACCATGATGGGATGGAAGATGACTACCATGCTGGACGTGCAACATCTGAATCGCATGAAAAGGAGAGAAGTCATGATGTGGACCGTGAATATCAACGCTCAGAGAGATCACATTCCCGGGAGTATGATTATTAG
>Glyma11g07200.1 sequence type=predicted peptide gene model=Glyma11g07200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDNNSNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLSGMAQFVSKFAEPGEPEYAPPVPETETPAQKRARIHKLRLEKGAAKAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVADKDINKPRGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSRSEEPRVREDRHADRDREISRERGRDKDRERERSREHSHERVRDRDHREDRHHRDRDRNRDRDRDRERDRDRGRDRDRTRDRDRERGRDRDRDREYDRHRERDRDYEVGDPDRGRSRDRESDYDRVESKHGERNHDYEPEDDRGRHNQYEHGRRHADPDHDPERYDHYNHGDDHGDHYNQYRDHDGMEDDYHAGRATSESHEKERSHDVDREYQRSERSHSREYDY* >Glyma11g07200.2 sequence type=predicted peptide gene model=Glyma11g07200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDNNSNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLSGMAQFVSKFAEPGEPEYAPPVPETETPAQKRARIHKLRLEKGAAKAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVADKDINKPRGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSRSEEPRVREDRHADREISRERGRDKDRERERSREHSHERVRDRDHREDRHHRDRDRNRDRDRDRERDRDRGRDRDRTRDRDRERGRDRDRDREYDRHRERDRDYEVGDPDRGRSRDRESDYDRVESKHGERNHDYEPEDDRGRHNQYEHGRRHADPDHDPERYDHYNHGDDHGDHYNQYRDHDGMEDDYHAGRATSESHEKERSHDVDREYQRSERSHSREYDY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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