SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36760 | AT | Annotation by Michelle Graham. TAIR10: aminopeptidase P1 | chr4:17326688-17329979 FORWARD LENGTH=645 | SoyBase | E_val: 0 | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0006869 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid transport | SoyBase | N/A | ISS |
| GO:0006891 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
| GO:0009987 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular process | SoyBase | N/A | ISS |
| GO:0010351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lithium ion transport | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004177 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aminopeptidase activity | SoyBase | N/A | ISS |
| GO:0010013 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: N-1-naphthylphthalamic acid binding | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG2413 | KOG | Xaa-Pro aminopeptidase | JGI | ISS | |
| PTHR10804 | Panther | PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P) | JGI | ISS | |
| PTHR10804:SF6 | Panther | gb def: possible cell cycle protein [leishmania major] | JGI | ISS | |
| PF00557 | PFAM | Metallopeptidase family M24 | JGI | ISS | |
| PF01321 | PFAM | Creatinase/Prolidase N-terminal domain | JGI | ISS | |
| UniRef100_G3E7N0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Xaa-Pro aminopeptidase 2 n=1 Tax=Glycine max RepID=G3E7N0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LHN4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHN4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g06900 not represented in the dataset |
Glyma11g06900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g38410 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g064500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g06900.1 sequence type=CDS gene model=Glyma11g06900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGATACACTTTCTGCGTTGAGGTCTTTGATGCTTTCTCAGTCTCCACCGCTTGATGCCTTAGTTGTTCCTTCTGAAGATTATCACCAGAGCGAATATGTGTCCGCACGAGACAAGCGCCGCGAATTCGTTTCCGGCTTCACTGGAAGTGCCGGCTTGGCACTTATAACAAAGAATGAAGCACTGCTGTGGACGGATGGACGATATTTTTTGCAGGCTGAGCAAGAACTTAGTGCTCAGTGGAAGCTTATGCGTATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATAATTTGCCAAAAGAGGCATCCATTGGGGTTGACCCTTGGTGCATTTCAATTGATACTGCTCAAAGATGGGAGCGTGCTTTTGCCGAAAAACAGCAAAAGCTGGTTCCAACCTCAAAAAATTTGGTGGATGAAGTTTGGATAAATCGCCCACAGCCACAGATTAATGCTGTTATCGTACATCCACTGAAATTTGCAGGTCGCTCTGTTGCAGACAAGTTGAAAGATTTGAGAAAAAAGCTTGTACATGAGCAAGCCCGCGGGATAATTTTCACAGCACTTGATGAAGTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTACTGTCCTGTTGTTCATGCATTTGCTATTGTGACATCCAATTCTGCTTTCATTTATGTGGACAAACGAAAGGTTTCTGTTGAGGTACAAGCTCATTTAGTGGAGAATGGAATTGAAATTCGAGAGTATACAGCTGTAAGCTCTGATACGACATTGCTTGCAACTGATGAGCTTGATTCTGTATCTACCGCCAAGGTTGCTTTAGCTGAAACAGAGGTCCGAAAAATTCCCAATGAAACTGCTAAGCATGCAAATGGTGAACATCAAGCAGAAGAAAATAGTAATGACCTCATATGGGCTGATCCAGGTTCATGCTGTTATGCACTGTATGCAAAGTTGAACCCTGATACAGTTCTCTTGCATCAATCACCTTTGGCCCTTGCGAAAGCTTTAAAGAACTCGGTGGAATTGGACGGGTTAAAGAAGGCACATATTCGGGATGGTGCAGCGGTCGTGCAGTATCTTGTCTGGCTGGATAAGAAGATGCAGGATATTTTGGGAGCTTCTGGTTACTTTTTGGAGAACGATTCTGTGAAAAAGGAGAAACATTTGCAGTCTTTGAAATTGACTGAGGTGACTGTAAGTGACCAGCTTGAAGGTTTTCGAGCATCAAAAGAGCATTTCAGAGGATTGAGTTTCCCCACTATTTCTTCAGTTGGCCCAAATGCAGCTATAATTCATTATTCTCCAAAGGCAGAAACATGTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGTAAACCTTCGACTCACGAAAAAGCGTGTTATACAGCAGTCCTAAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGGGCATTCTCTTGATATTCTTGCTCGAATTCCTTTGTGGAAGGATGGTCTTGATTATCGACATGGTACTGGTCATGGAATTGGGTCCTATTTGAATGTTCATGAAGGACCTCACTTAATCAGTTTCAGACCACAGGCTCGAAATGTACCATTGCAATCTTCCATGACTGTTACAGATGAACCTGGTTACTATGAGGATGGAGAGTTTGGGATAAGATTGGAGAATGTGCTTATTGTCAAAGAGGCTGGTACAAATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGGCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAGATAGATTGGCTGAACTCGTATCACTCCACATGCAGAGATATTCTAGCGCCATATTTGAATGAAGTTGAAAATGCATGGCTGAAAAAAGCCACTGAACCCGTAGGTGCATGA
>Glyma11g06900.1 sequence type=predicted peptide gene model=Glyma11g06900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDTLSALRSLMLSQSPPLDALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITKNEALLWTDGRYFLQAEQELSAQWKLMRIGEDPAVDIWMADNLPKEASIGVDPWCISIDTAQRWERAFAEKQQKLVPTSKNLVDEVWINRPQPQINAVIVHPLKFAGRSVADKLKDLRKKLVHEQARGIIFTALDEVAWLYNIRGSDVAYCPVVHAFAIVTSNSAFIYVDKRKVSVEVQAHLVENGIEIREYTAVSSDTTLLATDELDSVSTAKVALAETEVRKIPNETAKHANGEHQAEENSNDLIWADPGSCCYALYAKLNPDTVLLHQSPLALAKALKNSVELDGLKKAHIRDGAAVVQYLVWLDKKMQDILGASGYFLENDSVKKEKHLQSLKLTEVTVSDQLEGFRASKEHFRGLSFPTISSVGPNAAIIHYSPKAETCAELDPDKIYLFDSGAQYLDGTTDITRTVHFGKPSTHEKACYTAVLKGHIALGNARFPNGTNGHSLDILARIPLWKDGLDYRHGTGHGIGSYLNVHEGPHLISFRPQARNVPLQSSMTVTDEPGYYEDGEFGIRLENVLIVKEAGTNFNFGDRGYLSFEHITWAPYQTKLIDLNLLCPEEIDWLNSYHSTCRDILAPYLNEVENAWLKKATEPVGA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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