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Report for Sequence Feature Glyma11g06865

Feature Type:gene_model
Chromosome:Gm11
Start:4840147
stop:4842128
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g06865
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75080AT Annotation by Michelle Graham. TAIR10: Brassinosteroid signalling positive regulator (BZR1) family protein | chr1:28185709-28187063 FORWARD LENGTH=336 SoyBaseE_val: 7.00E-97ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009742GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048316GO-bp Annotation by Michelle Graham. GO Biological Process: seed development SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF05687PFAM Plant protein of unknown function (DUF822) JGI ISS
UniRef100_G7KC60UniRef Annotation by Michelle Graham. Most informative UniRef hit: BES1/BZR1-like protein n=2 Tax=Medicago truncatula RepID=G7KC60_MEDTR SoyBaseE_val: 4.00E-135ISS
UniRef100_I1LHN2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHN2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g06865
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g06865 not represented in the dataset
Glyma11g06865 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g06865
ParalogEvidenceComments
Glyma01g38450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g06865 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g064300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g06865
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g06865
>Glyma11g06865.1   sequence type=CDS   gene model=Glyma11g06865   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGGCGGCGGATCGACGGGGAGGTTGCCAACATGGAAGGAGAGAGAAAACAACAAGAGGAGAGAGAGGAGACGAAGAGCGATCGCCGCTAAGATCTACACCGGTCTTCGAGCTCAGGGGAACTACAAGCTTCCGAAGCACTGTGACAACAACGAGGTCCTGAAAGCTCTATGCGCCGAAGCTGGTTGGATCGTGGAAGAGGATGGCACCACTTATCGAAAGGGATGCAAGAGACCCAGCGCGAGTGAGATTGGAGGAACAGTGGCAAACATAAGCGCGTGTTCTTCGATTCAGCCAAGTCCACAATCCTCGTCATACCCGAGTCCTGTACCATCCTACCACGCTAGCCCAACCTCTTCCTCGTTCCCAAGCCCCACGCGCATTGACGGAAACCACCCTTCTTCCTTTCTCATCCCATTCATCCGCAACATAACTTCCATCCCCGCCAACCTCCCTCCTCTCAGGATATCCAACAGCGCCCCCGTCACCCCACCTCTCTCCTCTCCTCGTAGCTCTAAGCGCAAGGCTGATTTCGACTCCCTCCATAACGCCTCCCTCCGCCACCCTCTTTTTGCCACCTCCGCCCCTTCCAGCCCCTCTCGCCGCCACCACCTCGCCACCTCCACCATCCCGGAGTGCGATGAGTCCGACGCCTCCACCGTTGACTCCGCCTCTGGGCGCTGGGTTAGTTTTCAGGTTCAGACGACGATGGCGGCCGCTCCTCCTTCTCCCACCTTTAACCTCATGAAACCCGCCATGCAGCAGATCGCTGCCCAGGAAGGCATGCTGTGGGGTTCTGTTGCGGAGCGAGTCAGAGGAGGCTCCGATTTTGACTTCGAGAATGGCAGAGTCAAACCCTGGGAGGGTGAGAGAATACACGAGGTTGGAATGGATGATTTGGAGCTTACTCTAGGAGTTGGAAAGGCTTGA
Predicted protein sequences of Glyma11g06865
>Glyma11g06865.1   sequence type=predicted peptide   gene model=Glyma11g06865   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTGGGSTGRLPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGCKRPSASEIGGTVANISACSSIQPSPQSSSYPSPVPSYHASPTSSSFPSPTRIDGNHPSSFLIPFIRNITSIPANLPPLRISNSAPVTPPLSSPRSSKRKADFDSLHNASLRHPLFATSAPSSPSRRHHLATSTIPECDESDASTVDSASGRWVSFQVQTTMAAAPPSPTFNLMKPAMQQIAAQEGMLWGSVAERVRGGSDFDFENGRVKPWEGERIHEVGMDDLELTLGVGKA*






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