Glyma11g06830 - SoyBase

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Report for Sequence Feature Glyma11g06830

Feature Type:	gene_model
Chromosome:	Gm11
Start:	4820792
stop:	4824615
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g06830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36800	AT	Annotation by Michelle Graham. TAIR10: RUB1 conjugating enzyme 1 \| chr4:17341237-17342148 REVERSE LENGTH=184	SoyBase	E_val: 2.00E-120	ISS
GO:0006301	GO-bp	Annotation by Michelle Graham. GO Biological Process: postreplication repair	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
GO:0019787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: small conjugating protein ligase activity	SoyBase	N/A	ISS
GO:0019788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NEDD8 ligase activity	SoyBase	N/A	ISS
KOG0420	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF17	Panther		JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_B9SGH9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme m, putative n=1 Tax=Ricinus communis RepID=B9SGH9_RICCO	SoyBase	E_val: 1.00E-127	ISS
UniRef100_C6SV99	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6SV99_SOYBN	SoyBase	E_val: 7.00E-134	ISS

Expression Patterns of Glyma11g06830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g06830 not represented in the dataset	Glyma11g06830 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g06830

Paralog	Evidence	Comments
Glyma01g38470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g06830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g064000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g06830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g06830

Limit To All Plant Sequences

>Glyma11g06830.4   sequence type=transcript   gene model=Glyma11g06830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTGTGTAGGGATGCTATAGAGGGTTTTCGGTGCAGAGAATCCAAACGCTTCTATGGACGAAAGAGAAAATAGAGTTAAAAAGGTTACTACTCAGATTTTGCAGAGCCTGGAGCTGAGCTGAGAAAACCCCCAACCCCAACCTCAACCTTAACCTCTCCTCACTTTCTTTTCAACCAGGTTCTTTCTTTCTCACAAATCTGATTCATTTTCCCTATAATTTCCCACTTCTACTATTTTCTCTATTTCTTTTATTCCCTTTATCTCTGATTTCCCGACGATCCCTTTGCGTTAGGGTTTTTCGCTCGCTTCTTTTCAATTAGTGATTTAACTATACCTTTGATTGAGATATTGGATTGGATTCTGTATTGTGTAAAACAACTCTCTAGCACGATTGTTTCGCTTTCTCCGCGTCTATTTTCTAGATCACAGTGCTCTTTGATGGACCAGAATGTTTTCGTTTTCACTTTTCAATGCGACCTTTTGATCATCTATCCTCCGAATTTGCGTTAGAACTATGATTAAGCTTTTTAAAGTAAAGGAAAAACAGAGAGAACTGGCAGAAAATGCGAGTGGCGGACCACCCGTTAAGAAGCAAAGTGCCGGCGAGTTGCGTCTTCACAAAGATATAAGCGAGCTGAATCTACCAAAATCATGTACCATGCAATTCCCCAATGGCAAAGATGACCTGATGAACTTTGAAGTTTCAATTCGACCTGATGATGGATATTACTTAGGTGGCACATTTTTGTTTTCCTTTCAAGTGTCTCCCATCTATCCACATGAAGCACCAAAGGTTAAATGCAAGACAAAGGTCTATCATCCAAATATTGACTTGGAAGGAAATGTTTGTCTCAACATCTTACGAGAAGATTGGAAACCTGTCCTTAATATAAACACTGTCATCTATGGCTTGTATCATCTCTTCACGGAACCAAATTACGAGGATCCACTGAATCATGATGCTGCTGCTGTGTTGAGAGAGAACCCTAAGATGTTTGAATCTAATGTGAGGAGGGCAATGGCTGGAGGGTATGTGGGGCAAACCTTTTTCCCACGCTGTATTTAGACCTTTTGCACGATACCTTCAAGTTCCTGTTCAAATATGTTATCAATGCGTGAAGGCCCTTGGTTTGTAAAATTTATCAAAAAATTGGATTTTACTTTCGTCAGTTATGTTATTTTTCTTGGTGGAGCGACAGGCCAAGTTCCTAAGACCACCAAGCGCGTCTAAAAGCCAAACAAGTGGAATGTTCTTGTAACCTGTGCTTTAATTGAATGTTAACGTTTAATTCTAAAGTGGACCAAGCAGAAAAATGAGTTCAGCTGTCAATGTTGGTGTTTTGATTCCCTTGCATTATTTTTGGGTGGGTCCAATGCTTCCATGCACTTTATGATCATTTCCGGCTCCTCTCCCTCTCACTCCAACCTCTGAGAAGCCTAGAAACAAAAACAAATTAGCTAGGTCCGTTATTGGGAACTTGTTTCTAGAGACACAGGCGTATAAAAGCCACTTCAGCTGTCAATGCTAGCGTATTATGTT

>Glyma11g06830.5   sequence type=transcript   gene model=Glyma11g06830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTGTGTAGGGATGCTATAGAGGGTTTTCGGTGCAGAGAATCCAAACGCTTCTATGGACGAAAGAGAAAATAGAGTTAAAAAGGTTACTACTCAGATTTTGCAGAGCCTGGAGCTGAGCTGAGAAAACCCCCAACCCCAACCTCAACCTTAACCTCTCCTCACTTTCTTTTCAACCAGAACTATGATTAAGCTTTTTAAAGTAAAGGAAAAACAGAGAGAACTGGCAGAAAATGCGAGTGGCGGACCACCCGTTAAGAAGCAAAGTGCCGGCGAGTTGCGTCTTCACAAAGATATAAGCGAGCTGAATCTACCAAAATCATGTACCATGCAATTCCCCAATGGCAAAGATGACCTGATGAACTTTGAAGTTTCAATTCGACCTGATGATGGATATTACTTAGGTGGCACATTTTTGTTTTCCTTTCAAGTGTCTCCCATCTATCCACATGAAGCACCAAAGGTTAAATGCAAGACAAAGGTCTATCATCCAAATATTGACTTGGAAGGAAATGTTTGTCTCAACATCTTACGAGAAGATTGGAAACCTGTCCTTAATATAAACACTGTCATCTATGGCTTGTATCATCTCTTCACGGAACCAAATTACGAGGATCCACTGAATCATGATGCTGCTGCTGTGTTGAGAGAGAACCCTAAGATGTTTGAATCTAATGTGAGGAGGGCAATGGCTGGAGGGTATGTGGGGCAAACCTTTTTCCCACGCTGTATTTAGACCTTTTGCACGATACCTTCAAGTTCCTGTTCAAATATGTTATCAATGCGTGAAGGCCCTTGGTTTGTAAAATTTATCAAAAAATTGGATTTTACTTTCGTCAGTTATGTTATTTTTCTTGGTGGAGCGACAGGCCAAGTTCCTAAGACCACCAAGCGCGTCTAAAAGCCAAACAAGTGGAATGTTCTTGTAACCTGTGCTTTAATTGAATGTTAACGTTTAATTCTAAAGTGGACCAAGCAGAAAAATGAGTTCAGCTGTCAATGTTGGTGTTTTGATTCCCTTGCATTATTTTTGGGTGGGTCCAATGCTTCCATGCACTTTATGATCATTTCCGGCTCCTCTCCCTCTCACTCCAACCTCTGAGAAGCCTAGAAACAAAAACAAATTAGCTAGGTCCGTTATTGGGAACTTGTTTCTAGAGACACAGGCGTATAAAAGCCACTTCAGCTGTCAATGCTAGCGTATTATGTT

Coding sequences of Glyma11g06830

Limit To All Plant Sequences

>Glyma11g06830.2   sequence type=CDS   gene model=Glyma11g06830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTAAGCTTTTTAAAGTAAAGGAAAAACAGAGAGAACTGGCAGAAAATGCGAGTGGCGGACCACCCGTTAAGAAGCAAAGTGCCGGCGAGTTGCGTCTTCACAAAGATATAAGCGAGCTGAATCTACCAAAATCATGTACCATGCAATTCCCCAATGGCAAAGATGACCTGATGAACTTTGAAGTTTCAATTCGACCTGATGATGGATATTACTTAGGTGGCACATTTTTGTTTTCCTTTCAAGTGTCTCCCATCTATCCACATGAAGCACCAAAGGTTAAATGCAAGACAAAGGTCTATCATCCAAATATTGACTTGGAAGGAAATGTTTGTCTCAACATCTTACGAGAAGATTGGAAACCTGTCCTTAATATAAACACTGTCATCTATGGCTTGTATCATCTCTTCACGGAACCAAATTACGAGGATCCACTGAATCATGATGCTGCTGCTGTGTTGAGAGAGAACCCTAAGATGTTTGAATCTAATGTGAGGAGGGCAATGGCTGGAGGGTATGTGGGGCAAACCTTTTTCCCACGCTGTATTTAG

>Glyma11g06830.4   sequence type=CDS   gene model=Glyma11g06830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTAAGCTTTTTAAAGTAAAGGAAAAACAGAGAGAACTGGCAGAAAATGCGAGTGGCGGACCACCCGTTAAGAAGCAAAGTGCCGGCGAGTTGCGTCTTCACAAAGATATAAGCGAGCTGAATCTACCAAAATCATGTACCATGCAATTCCCCAATGGCAAAGATGACCTGATGAACTTTGAAGTTTCAATTCGACCTGATGATGGATATTACTTAGGTGGCACATTTTTGTTTTCCTTTCAAGTGTCTCCCATCTATCCACATGAAGCACCAAAGGTTAAATGCAAGACAAAGGTCTATCATCCAAATATTGACTTGGAAGGAAATGTTTGTCTCAACATCTTACGAGAAGATTGGAAACCTGTCCTTAATATAAACACTGTCATCTATGGCTTGTATCATCTCTTCACGGAACCAAATTACGAGGATCCACTGAATCATGATGCTGCTGCTGTGTTGAGAGAGAACCCTAAGATGTTTGAATCTAATGTGAGGAGGGCAATGGCTGGAGGGTATGTGGGGCAAACCTTTTTCCCACGCTGTATTTAG

>Glyma11g06830.5   sequence type=CDS   gene model=Glyma11g06830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTAAGCTTTTTAAAGTAAAGGAAAAACAGAGAGAACTGGCAGAAAATGCGAGTGGCGGACCACCCGTTAAGAAGCAAAGTGCCGGCGAGTTGCGTCTTCACAAAGATATAAGCGAGCTGAATCTACCAAAATCATGTACCATGCAATTCCCCAATGGCAAAGATGACCTGATGAACTTTGAAGTTTCAATTCGACCTGATGATGGATATTACTTAGGTGGCACATTTTTGTTTTCCTTTCAAGTGTCTCCCATCTATCCACATGAAGCACCAAAGGTTAAATGCAAGACAAAGGTCTATCATCCAAATATTGACTTGGAAGGAAATGTTTGTCTCAACATCTTACGAGAAGATTGGAAACCTGTCCTTAATATAAACACTGTCATCTATGGCTTGTATCATCTCTTCACGGAACCAAATTACGAGGATCCACTGAATCATGATGCTGCTGCTGTGTTGAGAGAGAACCCTAAGATGTTTGAATCTAATGTGAGGAGGGCAATGGCTGGAGGGTATGTGGGGCAAACCTTTTTCCCACGCTGTATTTAG

Predicted protein sequences of Glyma11g06830

Limit To All Plant Sequences

>Glyma11g06830.2   sequence type=predicted peptide   gene model=Glyma11g06830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKLFKVKEKQRELAENASGGPPVKKQSAGELRLHKDISELNLPKSCTMQFPNGKDDLMNFEVSIRPDDGYYLGGTFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNYEDPLNHDAAAVLRENPKMFESNVRRAMAGGYVGQTFFPRCI*

>Glyma11g06830.4   sequence type=predicted peptide   gene model=Glyma11g06830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKLFKVKEKQRELAENASGGPPVKKQSAGELRLHKDISELNLPKSCTMQFPNGKDDLMNFEVSIRPDDGYYLGGTFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNYEDPLNHDAAAVLRENPKMFESNVRRAMAGGYVGQTFFPRCI*

>Glyma11g06830.5   sequence type=predicted peptide   gene model=Glyma11g06830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKLFKVKEKQRELAENASGGPPVKKQSAGELRLHKDISELNLPKSCTMQFPNGKDDLMNFEVSIRPDDGYYLGGTFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNYEDPLNHDAAAVLRENPKMFESNVRRAMAGGYVGQTFFPRCI*

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