Glyma11g06811 - SoyBase

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Report for Sequence Feature Glyma11g06811

Feature Type:	gene_model
Chromosome:	Gm11
Start:	4802905
stop:	4805403
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g06811

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G18630	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF677) \| chr2:8081154-8082496 FORWARD LENGTH=393	SoyBase	E_val: 5.00E-133	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PF05055	PFAM	Protein of unknown function (DUF677)	JGI		ISS
UniRef100_B9RZC5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT14A, putative n=1 Tax=Ricinus communis RepID=B9RZC5_RICCO	SoyBase	E_val: 2.00E-133	ISS
UniRef100_I1LHM5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHM5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g06811

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g06811 not represented in the dataset	Glyma11g06811 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g06811

Paralog	Evidence	Comments
Glyma01g38490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g06811 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g063800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g06811

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g06811

Limit To All Plant Sequences

>Glyma11g06811.2   sequence type=transcript   gene model=Glyma11g06811   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGACGAAGAAGCTGTTTTGAACCTTGAGTAAGAAAAGGACGTAGCAACCCTCTTTGGAATTGCCGGACCACTTCTTCGTTGACTTCTTGCATGGTTCGGGAAATCGCAAAACCCTCACAGTTCTCAATCACCTTCATAGCCTTTCCACAATCTTAACACCCACACACACCTTTTCTCTCTCAATCAATGCTTCAATTCAAGCTGCAATCCACTTCCGTCTATCATTCTTTTCCCATAATTGGCCATCTCAGATTCTTTTCACTCTTTTCCTTCACTTTCTAACTCTTTTTTCTTCGGGCAGAAATTCAAGTCAGAGATACCAACCTAATTCTCAGACCCAGGATTGTCTTTTGGGTGCTGGATCTTGCTACATTCGGGGCATTTTCTTTTCTTACATATCAAAGCCTGGATCTAATTGAGCACTTGAAACACTGCAATTGTTGGGGTTTGAGACAGTTGGTGATTGATTGTGATCCTATTGTATTTACCCTTCTAATTTTGGAAGTTAGGTTTAATCTTTGTTAGGACTAAAATTGGCTATGATGGGGGGTCAATCCAGTAAGATACCTAGCAGTAGTGATGTTCCAACACCCATCAAAATGGGTACCCATTCTCTGTATGCGGCTGATTTGAGTTCTTATGAGGCGGCATGTGTTGAAGATCCAAACTTGCAATCCTTAGATGCTACAATTCAGGAGCGCACCAACAGGGTGATCACCTCGCTTGCCCAAGGGATTGAGGTTCATTCCATATCGATTGAGTCACTAGGGGAAGTGACTGGTAGTTTGCTTGAAATGAATCAGGATGTTGCCAAAGTCATTCTAGAGTGTAAGCAAGATATATGGAACAAGAAGGACAGGGAGCTCTTCTCCTTGGTGGAGGACTTCTTTGAAAATAGCCTCCAGACATTGGAATTCTGCAATGCTCTTGATAAATGCTTGAATCGAGCACGCGAAAGGCATGTTATAGTTAAGTCTGCAATTACCTGTTTTGAGGAAGAGGTGCAAAATGGGGTTGAAGGGTCCACTTATTTGAAGACATTGCAAGAGCTTAAGGGTTTCAAGGAAGCCGGGGACCCCTTCACCGAAGAGTTTTATTCCTTGTTTCAGTCAGTTTATCAACAGCAGGCATCAATGCTGAAGAAATTGCAAATCAGAAAGCAAAAGCTTGATAAGAAACTGAAGTCCCTGAAGACATTGAAGAGGGTGTCAAATGCCATTTTCGTGGCTGCTTTTGTGTCTGTTTTGATTTTCTCGGTGGTGGCAGCTGCAATTGCTGCACCACCTGTTGTAACTGCTTTGGCTGGTGCATTGGCTGTTCCTATAGGCTCAGTGGGGAAATGGTGTAACTCTCTTTTTAAGCGATATGAGACAGCTTTAAAGGGCCAAAGAGAATTAATCATTTCGATGCAGGTTGGCACTTACATTACATTGGTGGACTTGAAGCACATTCAGGTGCGCATTGACCAATTGGAAATAAACATAGAGTCCATGTTGCAGAGTTCTGATTTTGCTCTTAGAAATGAGGATGCTGTAAAGTTTGCGATTGATGAGATTAAGAAGAATATAGACACTTTTGCAGAGACCATTGAGGCTTTGAGTAAGCAAGCTGATGAATGTAGTCGGCAGATAAGGAGAGCAAGGACAATGGTTGTGAAAAAGATTATTAATTACACAAACACTAGCTGAAAATCCTTCGATGCAATTGAACATCCTCTGTGAGTGTGGACAACAATAATGGAATCATGAGAAACGCAATCAAAGGGGGAATATGTCTAGGACATTAATAGAAAAATATATATGCAGTTAAAGCACCCTAACTCCTTCAAGTTGGGAGTCCGGTTTGTGATAGTAAATTCCTTCTTTATTGGTTTGCTGCATGTGAGAAACTTTTCTATGCTTGCATTGATAGGATCCTGATGTTTGAGGCATCCACTGACGACAATAGTTGCTGCACCTTATAGGAATCTGATGACATTTTCTAAGCATTGTTGGATTTGAAGTTGTAATTTTTCGATTGGCAGATTCGGATATATTTGCATGGAAATTAGTGAGTTGATGATTCTTTTCCGCCTAGCAGTCAGCTAATATTCAATGTAGAGTGGATTCTTGTGTGTTTTTTCTGGAATAAATCTT

Coding sequences of Glyma11g06811

Limit To All Plant Sequences

>Glyma11g06811.1   sequence type=CDS   gene model=Glyma11g06811   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGGGGTCAATCCAGTAAGATACCTAGCAGTAGTGATGTTCCAACACCCATCAAAATGGGTACCCATTCTCTGTATGCGGCTGATTTGAGTTCTTATGAGGCGGCATGTGTTGAAGATCCAAACTTGCAATCCTTAGATGCTACAATTCAGGAGCGCACCAACAGGGTGATCACCTCGCTTGCCCAAGGGATTGAGGTTCATTCCATATCGATTGAGTCACTAGGGGAAGTGACTGGTAGTTTGCTTGAAATGAATCAGGATGTTGCCAAAGTCATTCTAGAGTGTAAGCAAGATATATGGAACAAGAAGGACAGGGAGCTCTTCTCCTTGGTGGAGGACTTCTTTGAAAATAGCCTCCAGACATTGGAATTCTGCAATGCTCTTGATAAATGCTTGAATCGAGCACGCGAAAGGCATGTTATAGTTAAGTCTGCAATTACCTGTTTTGAGGAAGAGGTGCAAAATGGGGTTGAAGGGTCCACTTATTTGAAGACATTGCAAGAGCTTAAGGGTTTCAAGGAAGCCGGGGACCCCTTCACCGAAGAGTTTTATTCCTTGTTTCAGTCAGTTTATCAACAGCAGGCATCAATGCTGAAGAAATTGCAAATCAGAAAGCAAAAGCTTGATAAGAAACTGAAGTCCCTGAAGACATTGAAGAGGGTGTCAAATGCCATTTTCGTGGCTGCTTTTGTGTCTGTTTTGATTTTCTCGGTGGTGGCAGCTGCAATTGCTGCACCACCTGTTGTAACTGCTTTGGCTGGTGCATTGGCTGTTCCTATAGGCTCAGTGGGGAAATGGTGTAACTCTCTTTTTAAGCGATATGAGACAGCTTTAAAGGGCCAAAGAGAATTAATCATTTCGATGCAGGTTGGCACTTACATTACATTGGTGGACTTGAAGCACATTCAGGTGCGCATTGACCAATTGGAAATAAACATAGAGTCCATGTTGCAGAGTTCTGATTTTGCTCTTAGAAATGAGGATGCTGTAAAGTTTGCGATTGATGAGATTAAGAAGAATATAGACACTTTTGCAGAGACCATTGAGGCTTTGAGTAAGCAAGCTGATGAATGTAGTCGGCAGATAAGGAGAGCAAGGACAATGGTTGTGAAAAAGATTATTAATTACACAAACACTAGCTGA

>Glyma11g06811.2   sequence type=CDS   gene model=Glyma11g06811   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGGGGTCAATCCAGTAAGATACCTAGCAGTAGTGATGTTCCAACACCCATCAAAATGGGTACCCATTCTCTGTATGCGGCTGATTTGAGTTCTTATGAGGCGGCATGTGTTGAAGATCCAAACTTGCAATCCTTAGATGCTACAATTCAGGAGCGCACCAACAGGGTGATCACCTCGCTTGCCCAAGGGATTGAGGTTCATTCCATATCGATTGAGTCACTAGGGGAAGTGACTGGTAGTTTGCTTGAAATGAATCAGGATGTTGCCAAAGTCATTCTAGAGTGTAAGCAAGATATATGGAACAAGAAGGACAGGGAGCTCTTCTCCTTGGTGGAGGACTTCTTTGAAAATAGCCTCCAGACATTGGAATTCTGCAATGCTCTTGATAAATGCTTGAATCGAGCACGCGAAAGGCATGTTATAGTTAAGTCTGCAATTACCTGTTTTGAGGAAGAGGTGCAAAATGGGGTTGAAGGGTCCACTTATTTGAAGACATTGCAAGAGCTTAAGGGTTTCAAGGAAGCCGGGGACCCCTTCACCGAAGAGTTTTATTCCTTGTTTCAGTCAGTTTATCAACAGCAGGCATCAATGCTGAAGAAATTGCAAATCAGAAAGCAAAAGCTTGATAAGAAACTGAAGTCCCTGAAGACATTGAAGAGGGTGTCAAATGCCATTTTCGTGGCTGCTTTTGTGTCTGTTTTGATTTTCTCGGTGGTGGCAGCTGCAATTGCTGCACCACCTGTTGTAACTGCTTTGGCTGGTGCATTGGCTGTTCCTATAGGCTCAGTGGGGAAATGGTGTAACTCTCTTTTTAAGCGATATGAGACAGCTTTAAAGGGCCAAAGAGAATTAATCATTTCGATGCAGGTTGGCACTTACATTACATTGGTGGACTTGAAGCACATTCAGGTGCGCATTGACCAATTGGAAATAAACATAGAGTCCATGTTGCAGAGTTCTGATTTTGCTCTTAGAAATGAGGATGCTGTAAAGTTTGCGATTGATGAGATTAAGAAGAATATAGACACTTTTGCAGAGACCATTGAGGCTTTGAGTAAGCAAGCTGATGAATGTAGTCGGCAGATAAGGAGAGCAAGGACAATGGTTGTGAAAAAGATTATTAATTACACAAACACTAGCTGA

Predicted protein sequences of Glyma11g06811

Limit To All Plant Sequences

>Glyma11g06811.1   sequence type=predicted peptide   gene model=Glyma11g06811   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGGQSSKIPSSSDVPTPIKMGTHSLYAADLSSYEAACVEDPNLQSLDATIQERTNRVITSLAQGIEVHSISIESLGEVTGSLLEMNQDVAKVILECKQDIWNKKDRELFSLVEDFFENSLQTLEFCNALDKCLNRARERHVIVKSAITCFEEEVQNGVEGSTYLKTLQELKGFKEAGDPFTEEFYSLFQSVYQQQASMLKKLQIRKQKLDKKLKSLKTLKRVSNAIFVAAFVSVLIFSVVAAAIAAPPVVTALAGALAVPIGSVGKWCNSLFKRYETALKGQRELIISMQVGTYITLVDLKHIQVRIDQLEINIESMLQSSDFALRNEDAVKFAIDEIKKNIDTFAETIEALSKQADECSRQIRRARTMVVKKIINYTNTS*

>Glyma11g06811.2   sequence type=predicted peptide   gene model=Glyma11g06811   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGGQSSKIPSSSDVPTPIKMGTHSLYAADLSSYEAACVEDPNLQSLDATIQERTNRVITSLAQGIEVHSISIESLGEVTGSLLEMNQDVAKVILECKQDIWNKKDRELFSLVEDFFENSLQTLEFCNALDKCLNRARERHVIVKSAITCFEEEVQNGVEGSTYLKTLQELKGFKEAGDPFTEEFYSLFQSVYQQQASMLKKLQIRKQKLDKKLKSLKTLKRVSNAIFVAAFVSVLIFSVVAAAIAAPPVVTALAGALAVPIGSVGKWCNSLFKRYETALKGQRELIISMQVGTYITLVDLKHIQVRIDQLEINIESMLQSSDFALRNEDAVKFAIDEIKKNIDTFAETIEALSKQADECSRQIRRARTMVVKKIINYTNTS*

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