SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G21630 | AT | Annotation by Michelle Graham. TAIR10: chitin elicitor receptor kinase 1 | chr3:7615543-7618530 REVERSE LENGTH=617 | SoyBase | E_val: 2.00E-68 | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0002752 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell surface pattern recognition receptor signaling pathway | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0032491 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of molecule of fungal origin | SoyBase | N/A | ISS |
| GO:0032499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of peptidoglycan | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0071219 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to molecule of bacterial origin | SoyBase | N/A | ISS |
| GO:0071323 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to chitin | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008061 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chitin binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0019199 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transmembrane receptor protein kinase activity | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| GO:2001080 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chitosan binding | SoyBase | N/A | ISS |
| KOG1187 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| PF07714 | PFAM | Protein tyrosine kinase | JGI | ISS | |
| UniRef100_A5YJV9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: NFR5a n=6 Tax=Glycine RepID=A5YJV9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_A5YJV9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NFR5a n=6 Tax=Glycine RepID=A5YJV9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g06740 not represented in the dataset |
Glyma11g06740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g38560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g063100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g06740.1 sequence type=CDS gene model=Glyma11g06740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGTCTTCTTTCCCTTTCTTCCTCTCCACTCTCAGATTCTTTGTCTTGTGATCATGTTGTTTTCCACTAATATTGTAGCTCAATCACAACAGGACAATAGAACAAACTTTTCATGCCCTTCTGATTCACCGCCTTCATGTGAAACCTATGTAACATACATTGCTCAGTCTCCAAATTTTTTGAGTCTAACCAACATATCCAATATATTTGACACAAGCCCTTTATCCATTGCAAGAGCCAGTAACTTAGAGCCTATGGATGACAAGCTAGTCAAAGACCAAGTCTTACTCGTACCAGTAACCTGTGGTTGCACTGGAAACCGCTCTTTTGCCAATATCTCCTATGAGATCAACCAAGGTGATAGCTTCTACTTTGTTGCAACCACTTCATACGAGAATCTCACGAATTGGCGTGCAGTGATGGATTTAAACCCCGTTCTAAGTCCAAATAAGTTGCCAATAGGAATCCAAGTAGTATTTCCTTTATTCTGCAAGTGCCCTTCAAAGAACCAGTTGGACAAAGAGATAAAGTACCTGATTACATACGTGTGGAAGCCCGGTGACAATGTTTCCCTTGTAAGTGACAAGTTTGGTGCATCACCAGAGGACATAATGAGTGAAAACAACTATGGTCAGAACTTTACTGCTGCAAACAACCTTCCAGTTCTGATCCCAGTGACACGCTTGCCAGTTCTTGCTCGATCTCCTTCGGACGGAAGAAAAGGCGGAATTCGTCTTCCGGTTATAATTGGTATTAGCTTGGGATGCACGCTACTGGTTCTGGTTTTAGCAGTGTTACTGGTGTATGTATATTGTCTGAAAATGAAGACTTTGAATAGGAGTGCTTCATCGGCTGAAACTGCAGATAAACTACTTTCTGGAGTTTCAGGCTATGTAAGTAAGCCTACCATGTATGAAACTGATGCGATCATGGAAGCTACAATGAACCTCAGTGAGCAGTGCAAGATTGGGGAATCAGTGTACAAGGCAAACATAGAGGGTAAGGTTTTGGCAGTAAAAAGATTCAAGGAAGATGTCACGGAAGAGCTGAAAATTCTGCAGAAGGTGAATCATGGGAATCTGGTGAAACTAATGGGTGTCTCATCAGACAATGATGGAAACTGTTTTGTGGTTTATGAATACGCTGAAAATGGGTCTCTTGATGAGTGGCTATTCTCCAAGTCTTGTTCAGACACATCAAACTCAAGGGCATCCCTTACATGGTGTCAGAGGATAAGCATGGCAGTGGATGTTGCGATGGGTTTGCAGTACATGCATGAACATGCTTATCCAAGAATAGTCCACAGGGACATCACAAGCAGTAATATCCTTCTTGACTCGAACTTTAAGGCCAAGATAGCAAATTTCTCCATGGCCAGAACTTTTACCAACCCCATGATGCCAAAGATAGATGTCTTTGCATTTGGGGTGGTTCTGATTGAGTTGCTTACCGGAAGGAAAGCCATGACAACCAAGGAAAATGGTGAGGTGGTCATGCTGTGGAAGGACATTTGGAAGATCTTTGATCAAGAAGAGAATAGAGAGGAGAGGCTCAAAAAATGGATGGATCCTAAGTTAGAGAGTTATTATCCTATAGATTACGCTCTCAGCTTGGCCTCCTTGGCGGTGAATTGTACTGCAGATAAGTCTTTGTCCAGACCAACCATTGCAGAAATTGTCCTTAGCCTCTCCCTTCTCACTCAACCATCTCCCGCAACATTGGAGAGATCCTTGACTTCTTCTGGATTGGATGTAGAAGCTACTCAAATTGTCACTTCCATAGCAGCTCGTTGA
>Glyma11g06740.1 sequence type=predicted peptide gene model=Glyma11g06740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVFFPFLPLHSQILCLVIMLFSTNIVAQSQQDNRTNFSCPSDSPPSCETYVTYIAQSPNFLSLTNISNIFDTSPLSIARASNLEPMDDKLVKDQVLLVPVTCGCTGNRSFANISYEINQGDSFYFVATTSYENLTNWRAVMDLNPVLSPNKLPIGIQVVFPLFCKCPSKNQLDKEIKYLITYVWKPGDNVSLVSDKFGASPEDIMSENNYGQNFTAANNLPVLIPVTRLPVLARSPSDGRKGGIRLPVIIGISLGCTLLVLVLAVLLVYVYCLKMKTLNRSASSAETADKLLSGVSGYVSKPTMYETDAIMEATMNLSEQCKIGESVYKANIEGKVLAVKRFKEDVTEELKILQKVNHGNLVKLMGVSSDNDGNCFVVYEYAENGSLDEWLFSKSCSDTSNSRASLTWCQRISMAVDVAMGLQYMHEHAYPRIVHRDITSSNILLDSNFKAKIANFSMARTFTNPMMPKIDVFAFGVVLIELLTGRKAMTTKENGEVVMLWKDIWKIFDQEENREERLKKWMDPKLESYYPIDYALSLASLAVNCTADKSLSRPTIAEIVLSLSLLTQPSPATLERSLTSSGLDVEATQIVTSIAAR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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