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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G11130 | AT | Annotation by Michelle Graham. TAIR10: Clathrin, heavy chain | chr3:3482575-3491667 REVERSE LENGTH=1705 | SoyBase | E_val: 0 | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0006897 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endocytosis | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0030130 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: clathrin coat of trans-Golgi network vesicle | SoyBase | N/A | ISS |
| GO:0030132 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: clathrin coat of coated pit | SoyBase | N/A | ISS |
| GO:0005198 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural molecule activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0985 | KOG | Vesicle coat protein clathrin, heavy chain | JGI | ISS | |
| PTHR10292 | Panther | CLATHRIN HEAVY CHAIN | JGI | ISS | |
| PF00637 | PFAM | Region in Clathrin and VPS | JGI | ISS | |
| PF01394 | PFAM | Clathrin propeller repeat | JGI | ISS | |
| PF09268 | PFAM | Clathrin, heavy-chain linker | JGI | ISS | |
| UniRef100_I1LHL6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHL6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2QYW2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Clathrin heavy chain 2 n=1 Tax=Oryza sativa Japonica Group RepID=CLH2_ORYSJ | SoyBase | E_val: 0 | ISS |
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Glyma11g06720 not represented in the dataset |
Glyma11g06720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g38580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g062900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g06720.1 sequence type=CDS gene model=Glyma11g06720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGCGAACGCCCCCATCGCCATGCGCGAGACCTTAACGTTGGCAAGTGTCGGAATCAACCCGCAATTCATCACTTTCACGCATGTCACCATGGAATCGGACAAGTACATTTGCGTCAGGGAAACCGCGCCGCAGAACAGCGTCGTCATGATTGACATGACCATGCCAATGCAGCCTCTCCGACGCCCTATCACTGCCGATTCCGCTCTTATGAACCCTAACACCAGAATTCTCGCGCTTAAAGCTCAAGTTCCAGGCAGTACTCAGGATCATTTGCAAGTTTTTAACATTGAATCCAAAGCGAAGATGAAATCGTATCAAATGAGCCAACAGGTGGTGTTTTGGAAGTGGATAACACCAAAGACACTAGGCATAGTGACTCAGTCATCTGTGTACCATTGGTCAATTGAAGGTGATGGTGAGCCGGTTAAGGTGTTTGACCGAACAGCTAATTTGGCGAATAATCAGATTATCAACTATCGTTGTGATCCTACTGAAAAGTGGTTGGTTTTGATTGGAATTGCCCCCGGTTCTTCTGAGAGACCGCAACTTGTAAAAGGAAATATGCAACTCTTCTCTGTGGATCAACAGAGGAGCCAGGCTCTTGAAGCACATGCTGCCTCATTTGCCACATTTAGGGTTGCTGGCAATGATAAGGATTCAACTCTTATTTGTTTTGCATCAAAAAGCATCAATGCTGGACAGGTTACGTCAAAGATGCATGTCATCGAACTTGGTGCCCAGCCAGGCAAGCCATCATTTTCAAAAAAGCAAGCAGATCTCTTCTTCCCTCCAGACTTTGCTGATGACTTTCCTGTATCAATGCAGATTTCAAATAAGTATGGCTTGATATATGTTATCACAAAACTTGGGCTTTTATTTGTGTATGATCTAGAGACTGCCACTGCAGTTTACAGAAATCGAATCAGTCCCGATCCTGTATTTTTGACCACAGAAGCATCTTCAGATGGGGGCTTTTATGCTATAAATAGACGTGGCCAGGTGTTGCTCGCTACTGTGAATGAAGCAACCATTGTACCTTTTGTTAGTGGCCAGTTAAATAATTTGGAACTTGCTGTTAGTCTTGCTAAAAGAGGAAACCTCCCTGGTGCAGAAGAATTGGTTGTTAAGCGTTTTCAAGAATTATTTGCTCAGACCAAGTATAAGGAAGCTGCAGAGCTTGCTGCACAATCACCACAAGGAGTACTTCGTACTCCTGACACTGTTGCTAAATTTCAGAGTGTACCTGTGCAAGCTGGGCAAACGCCACCGTTATTGCAATACTTTGGAACTCTGTTAACCATGGGAAAACTCAATGCTTTTGAGTCACTGGAACTGTCACGGCTTGTTGTAAATCAGAACAAAAAGAATCTCTTGGAAAATTGGCTAGCTGAGGATAAACTTGAATGCAGTGAGGAGCTTGGTGACCTTGTGAAGACAGTGGATAATGACCTTGCATTGAAAATTTATATTAAAGCTAGAGCCACACCAAAAGTTGTTGCAGCTTTTGCGGAGAGGAGGGAATTTGATAAGATCCTGATATATTCTAAGCAGGTTGGATACACACCTGATTATATGTTCCTTCTCCAAACAATTTTACGAACAGACCCCCAGGGAGCTGTAAATTTTGCTCTGATGATGGCTCAAATGGAAGGAGGATGCCCCATTGACTACAACACAATAACTGATCTCTTTCTTCAGAGGAATTTGATCCGTGAGGCAACAGCCTTTTTGTTGGATGTGCTGAAGCCAAATCTTCCTGAACATGGATATCTTCAAACAAAGGTTCTGGAAATTAATCTTGTGACCTTTCCAAATGTTGCTGATGCTATATTGGCCAATGGCATGTTCAGTCATTATGATTGCCCACGTATTGGACAACTATGTGAAAAGGCGGGCCTGTTCATACGGGCTCTTCAGCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGGCTTTAGTTGAGTTCTTTGGAACCCTTTCTCGAGAATGGGCACTCGAGTGTATGAAAGATCTTTTACTTGTCAATCTTAGGGGCAATCTTCAAATAATTGTGCAGACTGCTAAGGAATATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAATCCTATGAAGGACTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGTGAGGATCCTGATATTCACTTCAAGTACATTGAGGCCGCTGCTAAAACTGGACAAATTAAGGAGGTAGAGCGTGTAACTAGAGAATCAAACTTTTATGATGCGGAGAAGACAAAGAATTTTCTTATGGAGGCTAAGCTTCCGGATGCACGTCCATTGATTAATGTGTGTGATCGTTTTGGCTTTGTTCCGGATCTCACCCATTATCTTTATACTAGCAACATGCTTCGCTATATTGAAGGTTATGTTCAAAAGGTCAATCCTGGAAATGCTCCTCTAGTTGTAGGACAGTTGTTAGATGATGAATGCCCTGAAGATTTTATCAAAGGTCTTATACTTTCAGTTCGCTCTCTCCTGCCAGTTGAGCCTTTAGTTGAAGAATGTGAAAAGAGGAATCGTCTCCGATTGCTTACTCAATTCTTGGAGCATCTTGTAAGTGAAGGAAGCCAGGATGTACATGTACATAATGCCCTGGGTAAAATCATTATTGACAGCAACAACAATCCTGAGCATTTTCTCACAACCAATCCATACTATGATTCTCGTGTTGTCGGTAAATATTGTGAAAAGCGGGATCCAACCCTTGCTGTTGTTGCTTACCGAAGAGGGCAATGTGATGATGAGCTTGTTAATGTTACTAATAAAAACTCCTTGTTCAAACTCCAAGCAAGATATGTTGTGCAAAGGATGGACTCTGACCTCTGGGAGAAAGTTCTTAATCCTGAGAATGAGTTTAGGCGACAGTTGATTGATCAAGTGGTGTCTACTGCTTTGCCTGAAAGCAAGAGTCCTGATCAAGTTTCAGCTGCAGTGAAAGCTTTTATGACTGCTGATCTTCCTCATGAGTTGATTGAGCTTCTTGAAAAGATTGTGCTACAAAATTCTGCTTTTAGTGGAAACTTCAATCTTCAAAATTTGCTGATCCTTACTGCAATCAAGGCAGATCCTTCTAGAGTTATGGATTACATAAATAGGTTGGACAACTTTGATGGGCCTGCAGTAGGGGAGGTGGCTGTGGAAGCACAACTATATGAAGAGGCATTTTCTATTTTCAAGAAATTTAATTTGAATGTTCAGGCTGTTAATGTCCTACTGGATAACCTTCAGACTATTGATCGCGCTGTGGAGTTTGCTTTCCGGGTTGAAGAAGATGCTGTTTGGAGCCAGGTGGCTAAAGCACAACTTAGGGAAGGCTTAGTGAGTGATGGAATTGAGTCATTCATTCGTGCAGATGATTCAACTCATTTCTTAGAGGTTATAAAGGCTGCTGAAGATGCAGATGTATACCATGACCTGGTAAAGTATCTTCTCATGGTTAGGCAGAATACCAAAGAGCCCAAGGTGGACAGTGAGCTCATCTATGCTTATGCTAAGATTGAATGCCTTGGAGAAATTGAAGAATTTATACTGATGCCAAATGTTGCCAATTTACCAAATGTTGGCGACCGCTTGTATGATGAGGCTTTGTATGAGGCTGCCAAAATTATATTTGCTTTTATTTCTAACTGGGCTAAGTTGGCAGTCACATTGGTGAAGCTTAAACAGTTCCAAGGTGCTGTTGATGCTGCCAGGAAAGCAAACAGTTCAAAAACATGGAAGGAAGTTTGTTTCGCCTGTGTTGATGCTGAGGAATTCCGCTTAGCTCAGATTTGTGGTCTCAATGTCATCATTCAGGTGGATGATTTGGAGGAGGTTAGCGAGTATTATCAAAACAGAGGATGCTTCAATGAACTCATATCTCTAATGGAGAGTGGGTTAGGATTGGAGCGTGCACATATGGGTATCTTTACTGAGTTGGGAGTTCTGTATGCGAGATATCGTCCTGAGAAGCTAATGGAACACATTAAGTTATTCTCAACTCGGCTTAACATTCCAAAGCTTATTCGAGCATGTGATGAACAGCAGCATTGGAAAGAGCTTACTTACCTATACATCCAATATGATGAGTTCGATAATACTGCAACCACCATAATGAATCACTCTCCAGAAGCATGGGACCACATGCAATTCAAAGATGTGATAGTTAAAGTTGCAAGTGTGGAGCTGTACTATAAGGCTGTTCACTTCTACTTGAAAGAACATCCAGATATAATAAATGATATGTTAAATGTGATTGCTCTTCGTGTGGACCATACTCGTGTAGTAGATATTATGCAGAAGGCTGGCCACCTCAGATTAGTTAAGCCGTACATGGTTGCAGTTCAAAGCAACAATGTGTCTGCTGTCAATGAGGCTTTGAATGAAATTTATGCTGAGGAAGAAGACTATGACAGACTCCGTGAATCAATAGATCTGCATGATAACTTCGATCAGATAGGTCTTGCACAGAAGATTGAGAAGCATGAACTTCTTGAGATGAGGCGTGTTGCTGCCTACATTTACAAGAAAGCAGGAAGATGGAAGCAATCCATTGCTTTGTCAAAGAAAGACAATCTTTACAAGGACTGTATGGAAACATGCTCTCAATCTGGTGACCGTGAACTCTCGGAAGATTTGCTTGTCTACTTTATTGAGCAGGGAAAGAAAGAGTGTTTTGCATCATGCCTCTTTGTCTGTTATGATATTATATGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTTCCATATCTCTTGCAGTTTATTCGAGAGTATACAGGCAAGATAGATGAGCTTATCAAGGACAAAATTGAAGCACAAAATGAGGAGAAAGCTAAGGAAAAGGAGGAGAAGGAAGTACTTGCTCAGCAGAATATGTATGCCCAGTTGCTACCGCTTGCTTTGCCAGCACCTCCTATGCAAGGAATGGGGGGAGGTTATGCCCCTTCCCCACCACCACCCATGGGCGGAATGGGGATGCCACCAATGCCTCCTTTTGGTATGCCTCCAATGGGTGGGGGCTACTGA
>Glyma11g06720.1 sequence type=predicted peptide gene model=Glyma11g06720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAANAPIAMRETLTLASVGINPQFITFTHVTMESDKYICVRETAPQNSVVMIDMTMPMQPLRRPITADSALMNPNTRILALKAQVPGSTQDHLQVFNIESKAKMKSYQMSQQVVFWKWITPKTLGIVTQSSVYHWSIEGDGEPVKVFDRTANLANNQIINYRCDPTEKWLVLIGIAPGSSERPQLVKGNMQLFSVDQQRSQALEAHAASFATFRVAGNDKDSTLICFASKSINAGQVTSKMHVIELGAQPGKPSFSKKQADLFFPPDFADDFPVSMQISNKYGLIYVITKLGLLFVYDLETATAVYRNRISPDPVFLTTEASSDGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVSLAKRGNLPGAEELVVKRFQELFAQTKYKEAAELAAQSPQGVLRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTMGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYMFLLQTILRTDPQGAVNFALMMAQMEGGCPIDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLEINLVTFPNVADAILANGMFSHYDCPRIGQLCEKAGLFIRALQHYTELPDIKRVIVNTHAIEPQALVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYSEQLGVDACIKLFEQFKSYEGLYFFLGAYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELVNVTNKNSLFKLQARYVVQRMDSDLWEKVLNPENEFRRQLIDQVVSTALPESKSPDQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAFSIFKKFNLNVQAVNVLLDNLQTIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDGIESFIRADDSTHFLEVIKAAEDADVYHDLVKYLLMVRQNTKEPKVDSELIYAYAKIECLGEIEEFILMPNVANLPNVGDRLYDEALYEAAKIIFAFISNWAKLAVTLVKLKQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNVIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNTATTIMNHSPEAWDHMQFKDVIVKVASVELYYKAVHFYLKEHPDIINDMLNVIALRVDHTRVVDIMQKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYAEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDCMETCSQSGDRELSEDLLVYFIEQGKKECFASCLFVCYDIIWPDVALELAWMNNMIDFAFPYLLQFIREYTGKIDELIKDKIEAQNEEKAKEKEEKEVLAQQNMYAQLLPLALPAPPMQGMGGGYAPSPPPPMGGMGMPPMPPFGMPPMGGGY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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