Report for Sequence Feature Glyma11g06480
Feature Type: gene_model
Chromosome: Gm11
Start: 4566995
stop: 4570270
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g06480
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G37210 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:17512376-17514421 FORWARD LENGTH=492
SoyBase E_val: 4.00E-124 ISS
GO:0006306 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA methylation
SoyBase N/A ISS
GO:0006342 GO-bp
Annotation by Michelle Graham. GO Biological Process: chromatin silencing
SoyBase N/A ISS
GO:0006346 GO-bp
Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009855 GO-bp
Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry
SoyBase N/A ISS
GO:0009909 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of flower development
SoyBase N/A ISS
GO:0010014 GO-bp
Annotation by Michelle Graham. GO Biological Process: meristem initiation
SoyBase N/A ISS
GO:0010073 GO-bp
Annotation by Michelle Graham. GO Biological Process: meristem maintenance
SoyBase N/A ISS
GO:0016246 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA interference
SoyBase N/A ISS
GO:0016570 GO-bp
Annotation by Michelle Graham. GO Biological Process: histone modification
SoyBase N/A ISS
GO:0031047 GO-bp
Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA
SoyBase N/A ISS
GO:0031048 GO-bp
Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA
SoyBase N/A ISS
GO:0048449 GO-bp
Annotation by Michelle Graham. GO Biological Process: floral organ formation
SoyBase N/A ISS
GO:0051567 GO-bp
Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
KOG4563
KOG
Cell cycle-regulated histone H1-binding protein
JGI ISS
PTHR15081 Panther
NUCLEAR AUTOANTIGENIC SPERM PROTEIN (NASP)-RELATED
JGI ISS
PTHR15081:SF1 Panther
PROTEIN HGV2
JGI ISS
PF10516 PFAM
SHNi-TPR
JGI ISS
UniRef100_G7K9G9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nuclear autoantigenic sperm protein n=1 Tax=Medicago truncatula RepID=G7K9G9_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1LHJ6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHJ6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma11g06480
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma11g06480
Paralog Evidence Comments
Glyma01g38800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g06480 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g061000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g06480
Coding sequences of Glyma11g06480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g06480.1 sequence type=CDS gene model=Glyma11g06480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGAAGAAGCTCCTGCATCTGAAACCTCCGTCACAATGCCTCAACCGGCGGAAGTCATCACCGTCGACGGAACCCTAACCTCTTCCGAGAATGACAAGAGCGGAATCTCCGTCGATGCCGCCGCGCACGGCGGTGAAAAGACGGTGTCCAACGCTGAACCTTCCGGTAGCGATCCTCAGAAGTCTCTGGAGTTGGCGAACGAGCTGATGGAAAAAGGAAACAAGGCAATTAAGGAGAACGATTTTGGAGAAGCAGCTGATAACTTCAGCCGTGCTCTCGAAATCAGAGTGGCACATTATGGTGAACTTGCTCCTGAGTGTGTGCACACATATTACAAATATGGGTGTGCACTTTTATACAAGGCTCAGGAGGAAGCTGATCCTTTAGCTGATGTGCCCAAGAAGGAGGATGGATCTCAACATGGCTCTAACAAAGATGGTTCTGTGAAGGGTTCTTTGAATGCTGAATCTTCCACAGCTTCTATTTCAAACAATGCCGGGCAGGATGTGACTTCAAATGACCAGGGTGGAGCAGTGGATGATGGGTCAACTAAGAATGACCCGGAAGAAGATGACGAGGATAGTGATGCTGAAGACTTGGCAGAAGCTGATGAAGATGAGACTGACTTGGACCTGGCATGGAAAATGCTTGATATTGCCAGAGCCATTGCTGAAAAGCAATCTGTCAATACAATAGAACAGGTGGACATATTATCAACATTGGCAGATGTTGCATTGGAAAGAGAGGATTTTGAAACTTCCCTCTCGGATTACCAGAAGGCACTAACCATCTTGGAACAACTGGTTGAACCAGATGATAGAAATATTGCTGACTTAAATTTTCGCATATGCTTATGTTTGGAGGTTAGTTCTAAGCCTCAAGAAGCAATTGCTTACTGCCAGAAGGCTACATCTGTTTGTAAGGCACGATTACATCGTCTTACAGATGAAGTAAAGAGTTGTTCAGATTTGACATCTGCTTCTGAGTTAGCTCAGGATTTACCAGCATGCCCCAAATCTGAGTCTAATAACTCAATTTTGGATAAACAATCAGAGATTGAAACTCTCAAAGGTCTATCAAGTGAGCTGGAAAAGAAGCTTGAAGATTTGCAACAGTTAGTCTCGAACCCAAAGTCAATTCTTGCTGAGATCCTAGGAATAGCAGCTGCCAAGGTAGGCAATGTGAAGGAATCATCTTCAGCAACGGTGAGTTCCTCACGGTTGGCTACTGCCAACAGCAGTGGAGGTTTTGACTCCCCAACCATTTCAACTGCCCACACCAATGGATCTGGTGGAGTCACACACCTTGGTGTGGTGGGAAGAGGAGTTAAGCGAGCATCAAATGCCACTCCGGCAGAAGGAAGCACACCAAAGAAACCGGCATTAGAGTCTACTGAAGACAAAGGTGATGGCAACGCACACTGA
Predicted protein sequences of Glyma11g06480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g06480.1 sequence type=predicted peptide gene model=Glyma11g06480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAEEAPASETSVTMPQPAEVITVDGTLTSSENDKSGISVDAAAHGGEKTVSNAEPSGSDPQKSLELANELMEKGNKAIKENDFGEAADNFSRALEIRVAHYGELAPECVHTYYKYGCALLYKAQEEADPLADVPKKEDGSQHGSNKDGSVKGSLNAESSTASISNNAGQDVTSNDQGGAVDDGSTKNDPEEDDEDSDAEDLAEADEDETDLDLAWKMLDIARAIAEKQSVNTIEQVDILSTLADVALEREDFETSLSDYQKALTILEQLVEPDDRNIADLNFRICLCLEVSSKPQEAIAYCQKATSVCKARLHRLTDEVKSCSDLTSASELAQDLPACPKSESNNSILDKQSEIETLKGLSSELEKKLEDLQQLVSNPKSILAEILGIAAAKVGNVKESSSATVSSSRLATANSSGGFDSPTISTAHTNGSGGVTHLGVVGRGVKRASNATPAEGSTPKKPALESTEDKGDGNAH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
