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Report for Sequence Feature Glyma11g06460

Feature Type:gene_model
Chromosome:Gm11
Start:4562684
stop:4563648
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37200AT Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein | chr4:17509836-17511230 REVERSE LENGTH=261 SoyBaseE_val: 9.00E-97ISS
GO:0006662GO-bp Annotation by Michelle Graham. GO Biological Process: glycerol ether metabolic process SoyBaseN/AISS
GO:0010190GO-bp Annotation by Michelle Graham. GO Biological Process: cytochrome b6f complex assembly SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0045454GO-bp Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0031977GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0015035GO-mf Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity SoyBaseN/AISS
GO:0016671GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor SoyBaseN/AISS
KOG0907 KOG Thioredoxin JGI ISS
PTHR10438Panther THIOREDOXIN-RELATED JGI ISS
PTHR10438:SF103Panther OS03G0767500 PROTEIN JGI ISS
PF00085PFAM Thioredoxin JGI ISS
UniRef100_G7K9G6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein disulfide-isomerase n=1 Tax=Medicago truncatula RepID=G7K9G6_MEDTR SoyBaseE_val: 6.00E-101ISS
UniRef100_I1J932UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J932_SOYBN SoyBaseE_val: 8.00E-104ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g06460 not represented in the dataset

Glyma11g06460 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g38930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g060800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g06460.2   sequence type=CDS   gene model=Glyma11g06460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTTGGGCCTTTTCTTGTCTACGAGGTTGGATTTCGGTGTTTCCCTCAAAGATCTCTCTGCCATTGCAATGCCTTACGAAGAGGCTCTCTCCAATGGGAAGCCCACTGTGGTGGAGTTTTATGCAGATTGGTGTGAGGTATGCCGGGAATTTGCTCCTGACGTCTACAAAGTAGAGCAGCAATTCAAGGATCAAGTTAATTTTGTGATGTTGAATGTTGATAATACAAAGTGGGAGCAAGAGCTTGACGAGTTTGGCATGGAGGGTATTCCACACTTTGCATTCCTTGATAAAATAGGCAATGAGGAGGGCAATGTTGTGGGTAGGCTTCCAAGACAGTACTTGCTTGAAAATGTCGATGCCCTTGCTCGTGGAGAAACATCTGTTCCTCATGCTCGTGTTGTAGGTCAATATTCAAATGCTGAGGCAAGGAAGGTGCATCAAGTTGCTGATCCAAGACGTCATGGTTAG

>Glyma11g06460.2   sequence type=predicted peptide   gene model=Glyma11g06460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ALGLFLSTRLDFGVSLKDLSAIAMPYEEALSNGKPTVVEFYADWCEVCREFAPDVYKVEQQFKDQVNFVMLNVDNTKWEQELDEFGMEGIPHFAFLDKIGNEEGNVVGRLPRQYLLENVDALARGETSVPHARVVGQYSNAEARKVHQVADPRRHG*







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