Glyma11g06280 - SoyBase

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Report for Sequence Feature Glyma11g06280

Feature Type:	gene_model
Chromosome:	Gm11
Start:	4457688
stop:	4459409
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g06280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G23640	AT	Annotation by Michelle Graham. TAIR10: Reticulan like protein B13 \| chr2:10057554-10059042 FORWARD LENGTH=206	SoyBase	E_val: 1.00E-40	ISS
GO:0071786	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum tubular network organization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005789	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0071458	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to cytosolic side of endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0071782	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum tubular network	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1792	KOG	Reticulon	JGI		ISS
PTHR10994	Panther	RETICULON/NOGO	JGI		ISS
PTHR10994:SF27	Panther	RETICULON-RELATED (PLANT)	JGI		ISS
PF02453	PFAM	Reticulon	JGI		ISS
UniRef100_Q9ZTZ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 24 kDa seed maturation protein n=1 Tax=Glycine max RepID=Q9ZTZ3_SOYBN	SoyBase	E_val: 1.00E-150	ISS
UniRef100_Q9ZTZ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: 24 kDa seed maturation protein n=1 Tax=Glycine max RepID=Q9ZTZ3_SOYBN	SoyBase	E_val: 1.00E-150	ISS

Expression Patterns of Glyma11g06280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g06280 not represented in the dataset	Glyma11g06280 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g06280

Paralog	Evidence	Comments
Glyma01g38990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g06280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g059100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g06280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g06280

Limit To All Plant Sequences

>Glyma11g06280.2   sequence type=transcript   gene model=Glyma11g06280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTATATATTTGAAAATGTAAGTGGCTTTGCTTCCAAACACTTGAACATCATCTACATTTCATCACAATCTTCCTCAATCATGTCTTCAGAAACAAAAGCAGAAACACAAACTTTGACCACCCCCTCTTACTCCTCAGATGTTGACAATGGTATAGTGAAGGATGTAGTCCTATGGAGAAGAAAGAAAATAAATATAAGCGTTCTTGTTGCGGCAACAGCGGCATGGGTGTTGATGGAAGTGTTTGAATTCAACTTCCTCACTCTCATATCATGGGTGGCCATACTCGGTCTTGCTTCAATATTCCTCTATGCCAATATGCTTAGACTTTTGGGCAAGGAACCACCGAACTTGTTGGGGTTGGAAGTGAGTGAAAAAACAACAACGAGAATAGCACACACAGTTCGAGCATGGATTGAAGAAGGAATAAGGTGGTTGTTCCTTGTGGGCGCAGAGAAAGAGTGGCCCGTGTTTGTGGGGGCTGTGGCTGGATTGTTATCACTATCTTATTTAGGAAGTTGCATGGACCTCCTAACACTAGTTTATATGGGTACGTACGTGGTTAAGTTATTTTACGAATCGTTTCTTTCTCGATCTCACTATTTGTTTAATTTTAATTTTGATGTGTAGGTACGTTAGTGGGAATGGCAGTTCCATTAACTTATGTGAAGAACGAGGACAAGATTAAGAGGTTTGTGGAGTGGTTGAGGGAGAAACACAAGAGATATTATCAGATTATTGACGAGAAGACCATTCAGAAGATTAAAAGCAGAATCGTAAAGGAGAAGAAAACAGAGTAATTAGCTTTTTAAGAGAAATGTGCACGGTTATGCTGTATTATTTAATGAATATTAAGAGTCTATTATTTGTTTCGTTATATTTCGGTAATGTTATGAATAGATTAGTATAACGTAAGAATTGTAACTTCGCCCTGAAAAGTTAAACTCTTAAGTTAATATTATTATTACGAGTGTTCATCAGCAAATGTGGACTATTACGAGTGTTAATCATCAGCAAATGTGGATCCGAGGCTCAATTGTAGTGGGTCTGACTCCAGATCAGAAGATTGCGTGTTAGATTCGCGGTCGGGTTCAATTCCCAAATTTTTGTCTTTTTTTTCGGTAGAGATAATCTAATCTCTAATTAGTTAGATAATAAATTGATATATCCAGATTCTTAGACTCACAGTTTTAGCATTCCAAATTCCAAATGGGTGTGTTATGGTGTTGCGAATCTCAAAATATCATTAAAAGACTAAGCATTTGTATGAGTTATATACCGGAATATAAAAATGATTAAGTTTT

Coding sequences of Glyma11g06280

Limit To All Plant Sequences

>Glyma11g06280.1   sequence type=CDS   gene model=Glyma11g06280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCAGAAACAAAAGCAGAAACACAAACTTTGACCACCCCCTCTTACTCCTCAGATGTTGACAATGGTATAGTGAAGGATGTAGTCCTATGGAGAAGAAAGAAAATAAATATAAGCGTTCTTGTTGCGGCAACAGCGGCATGGGTGTTGATGGAAGTGTTTGAATTCAACTTCCTCACTCTCATATCATGGGTGGCCATACTCGGTCTTGCTTCAATATTCCTCTATGCCAATATGCTTAGACTTTTGGGCAAGGAACCACCGAACTTGTTGGGGTTGGAAGTGAGTGAAAAAACAACAACGAGAATAGCACACACAGTTCGAGCATGGATTGAAGAAGGAATAAGGTGGTTGTTCCTTGTGGGCGCAGAGAAAGAGTGGCCCGTGTTTGTGGGGGCTGTGGCTGGATTGTTATCACTATCTTATTTAGGAAGTTGCATGGACCTCCTAACACTAGTTTATATGGGTACGTTAGTGGGAATGGCAGTTCCATTAACTTATGTGAAGAACGAGGACAAGATTAAGAGGTTTGTGGAGTGGTTGAGGGAGAAACACAAGAGATATTATCAGATTATTGACGAGAAGACCATTCAGAAGATTAAAAGCAGAATCGTAAAGGAGAAGAAAACAGAGTAA

>Glyma11g06280.2   sequence type=CDS   gene model=Glyma11g06280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCAGAAACAAAAGCAGAAACACAAACTTTGACCACCCCCTCTTACTCCTCAGATGTTGACAATGGTATAGTGAAGGATGTAGTCCTATGGAGAAGAAAGAAAATAAATATAAGCGTTCTTGTTGCGGCAACAGCGGCATGGGTGTTGATGGAAGTGTTTGAATTCAACTTCCTCACTCTCATATCATGGGTGGCCATACTCGGTCTTGCTTCAATATTCCTCTATGCCAATATGCTTAGACTTTTGGGCAAGGAACCACCGAACTTGTTGGGGTTGGAAGTGAGTGAAAAAACAACAACGAGAATAGCACACACAGTTCGAGCATGGATTGAAGAAGGAATAAGGTGGTTGTTCCTTGTGGGCGCAGAGAAAGAGTGGCCCGTGTTTGTGGGGGCTGTGGCTGGATTGTTATCACTATCTTATTTAGGAAGTTGCATGGACCTCCTAACACTAGTTTATATGGGTACGTACGTGGTTAAGTTATTTTACGAATCGTTTCTTTCTCGATCTCACTATTTGTTTAATTTTAATTTTGATGTGTAG

Predicted protein sequences of Glyma11g06280

Limit To All Plant Sequences

>Glyma11g06280.1   sequence type=predicted peptide   gene model=Glyma11g06280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSETKAETQTLTTPSYSSDVDNGIVKDVVLWRRKKINISVLVAATAAWVLMEVFEFNFLTLISWVAILGLASIFLYANMLRLLGKEPPNLLGLEVSEKTTTRIAHTVRAWIEEGIRWLFLVGAEKEWPVFVGAVAGLLSLSYLGSCMDLLTLVYMGTLVGMAVPLTYVKNEDKIKRFVEWLREKHKRYYQIIDEKTIQKIKSRIVKEKKTE*

>Glyma11g06280.2   sequence type=predicted peptide   gene model=Glyma11g06280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSETKAETQTLTTPSYSSDVDNGIVKDVVLWRRKKINISVLVAATAAWVLMEVFEFNFLTLISWVAILGLASIFLYANMLRLLGKEPPNLLGLEVSEKTTTRIAHTVRAWIEEGIRWLFLVGAEKEWPVFVGAVAGLLSLSYLGSCMDLLTLVYMGTYVVKLFYESFLSRSHYLFNFNFDV*

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