SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G67130 | AT | Annotation by Michelle Graham. TAIR10: PLC-like phosphodiesterases superfamily protein | chr5:26791599-26793649 FORWARD LENGTH=426 | SoyBase | E_val: 0 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0046658 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane | SoyBase | N/A | ISS |
| GO:0004629 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipase C activity | SoyBase | N/A | ISS |
| GO:0008081 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity | SoyBase | N/A | ISS |
| UniRef100_G7K5B8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PI-PLC X domain-containing protein n=1 Tax=Medicago truncatula RepID=G7K5B8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LHC8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LHC8_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma11g05770 not represented in the dataset |
Glyma11g05770 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g39480 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g054200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g05770.2 sequence type=transcript gene model=Glyma11g05770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAAAACTAAAGGTTACAAAGCCGAAACTTTGATCAACCTCTCTCTCTCCTCTTGCACAGTAAAATCTCTTTCTTTTCCTTTCAACTTTTAAGTTTCAACCTTTCCTCTCTCTCTCTCTCTGGTGTGGTGGTGGTGCCATGCCCATGTGCTCGCGTTTGTTGGATTCCCGTACCAAATGCAGAGCCTCAGCCCCTACCATCTTTGCCCCACTCTTCTTCTCCCTCTTCCTCACCTCTTCCGCCGCATGCTTTAATGGAAATTGCCAGGTTCTGGAAGCATGTACAGCTGCCACCGATTGTGGGCCAGGCCTCTATTGCGGCAATTGCCCCGCTTTGGGCAGGACTCGGCCCGTTTGCACCAGAGGCCAAGCCACCATCGTTACATCTCTCGTGAATGGTTTGCCCTTCAACAAGTACTCGTGGATCATGACTCATAATTCGTTCAGCATCGTGGATGCGCCACCTTTGCCTGGAGGAGTTCAGAGACTCACCTTTTACAATCAAGAAGACACTGTTACTAACCAGTTGAGGAATGGAGCGAGAGGATTGATGTTGGATATGTACGACTTCGAGAATGATATCTGGCTTTGTCATTCATTTCGAGGGCAATGCTTCAACTTCACTGCATTTCAACCTGCAATAAATACTTTGAGAGAAGTGGAGGCATTCTTGACTCAAAACCCGACAGAGATCGTCACCATTGTAATTGAGGATTATGTGCATACTCCGAAGGGGTTGACTAATCTATTCAGAAATGCTGGACTTGATAAATATTGGTTTCCTGTGTCTGATATGCCTAAAAAGGGAGAAGATTGGCCCACTGTAACAGAGATGGTTCAAGTGAATCACCGACTTCTTGTTTTCACTTCGGATGCTTCAAAGGAAGCTGAAGAAGGAATAGCTTATCAGTGGTCTTACATGGTTGAGAATGAGTCTGGAGATCCTGGAGTTGAAGGGGGTTCTTGCCCGCATAGAAAAGAATCAAAGCCGCTAAATTCTAGAAGTGCATCACTTTTCTTGCAGAATTACTTTCCAACAGATCCAGTTGAAGCTGACTCATGCAAAGAGCATTCGGTTCCACTTGTTGATATGGTGAACACATGTTACAAAGCTGCAGGGAATGTGTTGCCTAACTTCCTAGCAGTTAATTTTTACATGGAGGGAGCACCTTTTGGATCTTGCAAGAACATTGCTGTACCTAATACAAGTCCAGTGACCAACACAGCTGGAAGCTTTACAGGATCTGTTCAGTTCTCCAGATCAGCTTCACCAGTCCATTCTCCAAATTGCTGGTGTTTCCTCGTGTTTTACTTCCTGCTTATTGCTGTTTTATTGTAACTGTGACGAGTATTATTGTATACCATATGCAAGCTAAGTCTCAAGTGAAGCTCTTAGTGTTATAATATTTACGTATTTATGTATCATAAGTGAGCTTTCTTTATAAGCGGGGTTTCTAGTGTTTTAGTATGTACACTGAAATACTGCCTCCAACAGTGAAATGTCATAGAACTGCTTATAGGCTAGAAATTAGATAAAACAAAATTTTGGAATTGCTGAGGCTATAATCAAGGATCAGTGAGGTCATCTGAGGTAGATGGTAACCAAGAAAGGCTAAGAACGCATCCAGAGCAGTTCAGGATTTGTACCAAGGTAACATTAGTCAACGACAGAATAGGAAATTTGCAATATAGGATCAGGATGGCTGAAAGCTCCTGGTCATTGTTACGGGCTTACGGTTTCTTGCAATTGTATAATGATGATTCTTATCACCTGCCTTTCCCTTTCCACTTCTGTATTGATGTTGAAACAATATAGTGGTTTCTCCTACATTTTAACCATATAACCTTATAGTTAATAGTTAACAGTTAATATGGAGCATGGATATTTTAGTTTAACAGAGGGACTTGCATGAGGTTTGCGCAGCTTTCAAAATCAGAACATCGTGTAGATTTGTTGTTACACTATTTAATCATGAGCAAATACCATCTGGAAGTTGAGTTTCCAACTCAATAACCTGATCCATTCCATCTGTTAGGACAATATCTCTATCAGCTATCAGATTTCAGA
>Glyma11g05770.1 sequence type=CDS gene model=Glyma11g05770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCCATGTGCTCGCGTTTGTTGGATTCCCGTACCAAATGCAGAGCCTCAGCCCCTACCATCTTTGCCCCACTCTTCTTCTCCCTCTTCCTCACCTCTTCCGCCGCATGCTTTAATGGAAATTGCCAGGTTCTGGAAGCATGTACAGCTGCCACCGATTGTGGGCCAGGCCTCTATTGCGGCAATTGCCCCGCTTTGGGCAGGACTCGGCCCGTTTGCACCAGAGGCCAAGCCACCATCGTTACATCTCTCGTGAATGGTTTGCCCTTCAACAAGTACTCGTGGATCATGACTCATAATTCGTTCAGCATCGTGGATGCGCCACCTTTGCCTGGAGGAGTTCAGAGACTCACCTTTTACAATCAAGAAGACACTGTTACTAACCAGTTGAGGAATGGAGCGAGAGGATTGATGTTGGATATGTACGACTTCGAGAATGATATCTGGCTTTGTCATTCATTTCGAGGGCAATGCTTCAACTTCACTGCATTTCAACCTGCAATAAATACTTTGAGAGAAGTGGAGGCATTCTTGACTCAAAACCCGACAGAGATCGTCACCATTGTAATTGAGGATTATGTGCATACTCCGAAGGGGTTGACTAATCTATTCAGAAATGCTGGACTTGATAAATATTGGTTTCCTGTGTCTGATATGCCTAAAAAGGGAGAAGATTGGCCCACTGTAACAGAGATGGTTCAAGTGAATCACCGACTTCTTGTTTTCACTTCGGATGCTTCAAAGGAAGCTGAAGAAGGAATAGCTTATCAGTGGTCTTACATGGTTGAGAATGAGTCTGGAGATCCTGGAGTTGAAGGGGGTTCTTGCCCGCATAGAAAAGAATCAAAGCCGCTAAATTCTAGAAGTGCATCACTTTTCTTGCAGAATTACTTTCCAACAGATCCAGTTGAAGCTGACTCATGCAAAGAGCATTCGGTTCCACTTGTTGATATGGTGAACACATGTTACAAAGCTGCAGGGAATGTGTTGCCTAACTTCCTAGCAGTTAATTTTTACATGAGGAGTGATGGTGGTGGTGTTTTTGATATCGTGGATAAAATGAATGGCCATTCATTGTGTGGCTGTAATACAATCTCTGCTTGCCAGGAGGGAGCACCTTTTGGATCTTGCAAGAACATTGCTGTACCTAATACAAGTCCAGTGACCAACACAGCTGGAAGCTTTACAGGATCTGTTCAGTTCTCCAGATCAGCTTCACCAGTCCATTCTCCAAATTGCTGGTGTTTCCTCGTGTTTTACTTCCTGCTTATTGCTGTTTTATTGTAA >Glyma11g05770.2 sequence type=CDS gene model=Glyma11g05770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCCATGTGCTCGCGTTTGTTGGATTCCCGTACCAAATGCAGAGCCTCAGCCCCTACCATCTTTGCCCCACTCTTCTTCTCCCTCTTCCTCACCTCTTCCGCCGCATGCTTTAATGGAAATTGCCAGGTTCTGGAAGCATGTACAGCTGCCACCGATTGTGGGCCAGGCCTCTATTGCGGCAATTGCCCCGCTTTGGGCAGGACTCGGCCCGTTTGCACCAGAGGCCAAGCCACCATCGTTACATCTCTCGTGAATGGTTTGCCCTTCAACAAGTACTCGTGGATCATGACTCATAATTCGTTCAGCATCGTGGATGCGCCACCTTTGCCTGGAGGAGTTCAGAGACTCACCTTTTACAATCAAGAAGACACTGTTACTAACCAGTTGAGGAATGGAGCGAGAGGATTGATGTTGGATATGTACGACTTCGAGAATGATATCTGGCTTTGTCATTCATTTCGAGGGCAATGCTTCAACTTCACTGCATTTCAACCTGCAATAAATACTTTGAGAGAAGTGGAGGCATTCTTGACTCAAAACCCGACAGAGATCGTCACCATTGTAATTGAGGATTATGTGCATACTCCGAAGGGGTTGACTAATCTATTCAGAAATGCTGGACTTGATAAATATTGGTTTCCTGTGTCTGATATGCCTAAAAAGGGAGAAGATTGGCCCACTGTAACAGAGATGGTTCAAGTGAATCACCGACTTCTTGTTTTCACTTCGGATGCTTCAAAGGAAGCTGAAGAAGGAATAGCTTATCAGTGGTCTTACATGGTTGAGAATGAGTCTGGAGATCCTGGAGTTGAAGGGGGTTCTTGCCCGCATAGAAAAGAATCAAAGCCGCTAAATTCTAGAAGTGCATCACTTTTCTTGCAGAATTACTTTCCAACAGATCCAGTTGAAGCTGACTCATGCAAAGAGCATTCGGTTCCACTTGTTGATATGGTGAACACATGTTACAAAGCTGCAGGGAATGTGTTGCCTAACTTCCTAGCAGTTAATTTTTACATGGAGGGAGCACCTTTTGGATCTTGCAAGAACATTGCTGTACCTAATACAAGTCCAGTGACCAACACAGCTGGAAGCTTTACAGGATCTGTTCAGTTCTCCAGATCAGCTTCACCAGTCCATTCTCCAAATTGCTGGTGTTTCCTCGTGTTTTACTTCCTGCTTATTGCTGTTTTATTGTAA
>Glyma11g05770.1 sequence type=predicted peptide gene model=Glyma11g05770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPMCSRLLDSRTKCRASAPTIFAPLFFSLFLTSSAACFNGNCQVLEACTAATDCGPGLYCGNCPALGRTRPVCTRGQATIVTSLVNGLPFNKYSWIMTHNSFSIVDAPPLPGGVQRLTFYNQEDTVTNQLRNGARGLMLDMYDFENDIWLCHSFRGQCFNFTAFQPAINTLREVEAFLTQNPTEIVTIVIEDYVHTPKGLTNLFRNAGLDKYWFPVSDMPKKGEDWPTVTEMVQVNHRLLVFTSDASKEAEEGIAYQWSYMVENESGDPGVEGGSCPHRKESKPLNSRSASLFLQNYFPTDPVEADSCKEHSVPLVDMVNTCYKAAGNVLPNFLAVNFYMRSDGGGVFDIVDKMNGHSLCGCNTISACQEGAPFGSCKNIAVPNTSPVTNTAGSFTGSVQFSRSASPVHSPNCWCFLVFYFLLIAVLL* >Glyma11g05770.2 sequence type=predicted peptide gene model=Glyma11g05770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPMCSRLLDSRTKCRASAPTIFAPLFFSLFLTSSAACFNGNCQVLEACTAATDCGPGLYCGNCPALGRTRPVCTRGQATIVTSLVNGLPFNKYSWIMTHNSFSIVDAPPLPGGVQRLTFYNQEDTVTNQLRNGARGLMLDMYDFENDIWLCHSFRGQCFNFTAFQPAINTLREVEAFLTQNPTEIVTIVIEDYVHTPKGLTNLFRNAGLDKYWFPVSDMPKKGEDWPTVTEMVQVNHRLLVFTSDASKEAEEGIAYQWSYMVENESGDPGVEGGSCPHRKESKPLNSRSASLFLQNYFPTDPVEADSCKEHSVPLVDMVNTCYKAAGNVLPNFLAVNFYMEGAPFGSCKNIAVPNTSPVTNTAGSFTGSVQFSRSASPVHSPNCWCFLVFYFLLIAVLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
