Glyma11g05670 - SoyBase

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Report for Sequence Feature Glyma11g05670

Feature Type:	gene_model
Chromosome:	Gm11
Start:	3994528
stop:	3998028
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g05670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G57870	AT	Annotation by Michelle Graham. TAIR10: sumo conjugation enzyme 1 \| chr3:21428831-21430110 REVERSE LENGTH=160	SoyBase	E_val: 2.00E-106	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0016925	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein sumoylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
GO:0019789	GO-mf	Annotation by Michelle Graham. GO Molecular Function: SUMO ligase activity	SoyBase	N/A	ISS
KOG0424	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF32	Panther	UBIQUITIN-CONJUGATING ENZYME E2D 2	JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_E6NU89	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: JHL03K20.8 protein n=1 Tax=Jatropha curcas RepID=E6NU89_9ROSI	SoyBase	E_val: 7.00E-111	ISS
UniRef100_I1LHB7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHB7_SOYBN	SoyBase	E_val: 9.00E-116	ISS

Expression Patterns of Glyma11g05670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g05670 not represented in the dataset	Glyma11g05670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g05670

Paralog	Evidence	Comments
Glyma01g39580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g05670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g053300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g05670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g05670

Limit To All Plant Sequences

>Glyma11g05670.2   sequence type=transcript   gene model=Glyma11g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGTAAGTCAAGTTTTTATATTATCCGATTGAACAACAAACAAAGCGAGAAAAACGAGCCAATTCATCATTTTCTCTCTTCTCTGCTTCTTCTTGTTCAAATCTTAGGAGCTGAGGAGAATCAATCGAGAGAAATATGTCTGGTATCGCTCGTGGACGCCTTGCTGAGGAACGAAAGTCATGGCGCAAAAACCATCCACACGGTTTCGTTGCCAAGCCCGAGACTCTACCTGATGGCACCGTAAATTTGATGGTCTGGCATTGCACTATTCCTGGCAAGACCGGGACTGATTGGGAGGGTGGATATTTCCCACTGACAATGCACTTCAGTGAAGATTACCCTAGCAAGCCTCCCAAGTGCAAATTCCCTCAAGGTTTCTTTCACCCTAATGTGTATCCATCTGGAACTGTTTGCTTGTCTATACTTAATGAAGATAGTGTAAGTATATTCTTTTGATAATCGCAAGACTTCTTGAAACTAGTAATGTGATTTTACATGCTTCCAAGAGGATGTATTTATAGAATCATTATTTTACATTTAGGGGTGGAGACCAGCTATAACAGTGAAGCAAATTCTTGTGGGCATCCAAGACCTGCTTGATCAACCAAATCCTGCTGACCCTGCCCAGACGGAGGGTTATCATCTATTCATCCAGGTAGCTAACCTAAAAATCCTACACTTTTCACTGTTTATTAAAAGAAACTTAAATTTGTTGGCTACCTTCACTTTTTATTTTTTGAATTTTATTATATTATTACTTTACAATGTTGGGAACTCATGGGGATAC

>Glyma11g05670.3   sequence type=transcript   gene model=Glyma11g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGAAAGCAAAGTTAGTTGAGAGAGAGAGGAGCTGAGGAGAATCAATCGAGAGAAATATGTCTGGTATCGCTCGTGGACGCCTTGCTGAGGAACGAAAGTCATGGCGCAAAAACCATCCACACGGTTTCGTTGCCAAGCCCGAGACTCTACCTGATGGCACCGTAAATTTGATGGTCTGGCATTGCACTATTCCTGGCAAGACCGGGACTGATTGGGAGGGTGGATATTTCCCACTGACAATGCACTTCAGTGAAGATTACCCTAGCAAGCCTCCCAAGTGCAAATTCCCTCAAGGTTTCTTTCACCCTAATGTGTATCCATCTGGAACTGTTTGCTTGTCTATACTTAATGAAGATAGTGGGTGGAGACCAGCTATAACAGTGAAGCAAATTCTTGTGGGCATCCAAGACCTGCTTGATCAACCAAATCCTGCTGACCCTGCCCAGACGGAGGGTTATCATCTATTCATCCAGGATGCAGCTGAGTACAAGAGAAGAGTCCGACAGCAGTCAAAGCAATATCCACCTCTTGTCTAGTGTTATATCTGCTCACTTTAGGAACTGTTATAGTATGTTAGTTGTTGTCAGTTATTTCTTGTTCTGTGTTAAAACTGTTATGTGATTGTTGGCTGCCATAATATGCAGACTCCATGGTTTTAACAATTTCTGCTTACTCTCAGGTCTGGATAACGTGTTAATATATAACAATGTGAAAGTCCACCAATAATACTTGTTGGCAACACTTGCTATGCCTGATGTTCGCTGGTACATTTCTATATGAATGATAAATTTACTGTGATGGATTATATGATATTATGACTCCTTCCCTGGAATTTGCTGTTTCTATTATGGAGATCAAACCTAGACCTAGTAGCCAATTGATTTGTCATTTAACACCTTTATCCATGTCCCATGGCAGCATAAATTATCACTGAAAATTTTGCTACCTAGGTGATGATGAAGGTTTTTCTTCTGACAATTTGCTTCAGTGGCATATGCTGTGAAAGCTGCTTGATTCCTCCCCCAAGCAATATTCACAAAATTTCTTATCCATTAAGGTGTAAGGATGACTTAGTTGCACTCGTTATATGCTTGTATGTTAGTTTTTCACTTTTTTCCCATTACGTTATTCACGGTGTAGTGGAGAGGTAGAGTTGGCTTATGTATGATGTAAATTTACGTGTTGATATCTGAATGTGATATGGATCCTAAAAGGAAATGGAATTCTGCCCATTTCTGGGGAAATGACTTGGCCTTTCAGACATATGTGTCATCATCATTATCCATCTATTAAGTTCGTGAGGAGACATTGTAAAATAATTTTTGATTTATTGATTGATGCTAAATTTAAC

>Glyma11g05670.4   sequence type=transcript   gene model=Glyma11g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGTAAGTCAAGTTTTTATATTATCCGATTGAACAACAAACAAAGCGAGAAAAACGAGCCAATTCATCATTTTCTCTCTTCTCTGCTTCTTCTTGTTCAAATCTTAGGAGCTGAGGAGAATCAATCGAGAGAAATATGTCTGGTATCGCTCGTGGACGCCTTGCTGAGGAACGAAAGTCATGGCGCAAAAACCATCCACACGGTTTCGTTGCCAAGCCCGAGACTCTACCTGATGGCACCGTAAATTTGATGGTCTGGCATTGCACTATTCCTGGCAAGACCGGGACTGATTGGGAGGGTGGATATTTCCCACTGACAATGCACTTCAGTGAAGATTACCCTAGCAAGCCTCCCAAGTGCAAATTCCCTCAAGGTTTCTTTCACCCTAATGTGTATCCATCTGGAACTGTTTGCTTGTCTATACTTAATGAAGATAGTGGGTGGAGACCAGCTATAACAGTGAAGCAAATTCTTGTGGGCATCCAAGACCTGCTTGATCAACCAAATCCTGCTGACCCTGCCCAGACGGAGGGTTATCATCTATTCATCCAGGTCTGGATAACGTGTTAATATATAACAATGTGAAAGTCCACCAATAATACTTGTTGGCAACACTTGCTATGCCTGATGTTCGCTGGTACATTTCTATATGAATGATAAATTTACTGTGATGGATTATATGATATTATGACTCCTTCCCTGG

Coding sequences of Glyma11g05670

Limit To All Plant Sequences

>Glyma11g05670.1   sequence type=CDS   gene model=Glyma11g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGTATCGCTCGTGGACGCCTTGCTGAGGAACGAAAGTCATGGCGCAAAAACCATCCACACGGTTTCGTTGCCAAGCCCGAGACTCTACCTGATGGCACCGTAAATTTGATGGTCTGGCATTGCACTATTCCTGGCAAGACCGGGACTGATTGGGAGGGTGGATATTTCCCACTGACAATGCACTTCAGTGAAGATTACCCTAGCAAGCCTCCCAAGTGCAAATTCCCTCAAGGTTTCTTTCACCCTAATGTGTATCCATCTGGAACTGTTTGCTTGTCTATACTTAATGAAGATAGTGGGTGGAGACCAGCTATAACAGTGAAGCAAATTCTTGTGGGCATCCAAGACCTGCTTGATCAACCAAATCCTGCTGACCCTGCCCAGACGGAGGGTTATCATCTATTCATCCAGGATGCAGCTGAGTACAAGAGAAGAGTCCGACAGCAGTCAAAGCAATATCCACCTCTTGTCTAG

>Glyma11g05670.2   sequence type=CDS   gene model=Glyma11g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGTATCGCTCGTGGACGCCTTGCTGAGGAACGAAAGTCATGGCGCAAAAACCATCCACACGGTTTCGTTGCCAAGCCCGAGACTCTACCTGATGGCACCGTAAATTTGATGGTCTGGCATTGCACTATTCCTGGCAAGACCGGGACTGATTGGGAGGGTGGATATTTCCCACTGACAATGCACTTCAGTGAAGATTACCCTAGCAAGCCTCCCAAGTGCAAATTCCCTCAAGGTTTCTTTCACCCTAATGTGTATCCATCTGGAACTGTTTGCTTGTCTATACTTAATGAAGATAGTGTAAGTATATTCTTTTGA

>Glyma11g05670.3   sequence type=CDS   gene model=Glyma11g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGTATCGCTCGTGGACGCCTTGCTGAGGAACGAAAGTCATGGCGCAAAAACCATCCACACGGTTTCGTTGCCAAGCCCGAGACTCTACCTGATGGCACCGTAAATTTGATGGTCTGGCATTGCACTATTCCTGGCAAGACCGGGACTGATTGGGAGGGTGGATATTTCCCACTGACAATGCACTTCAGTGAAGATTACCCTAGCAAGCCTCCCAAGTGCAAATTCCCTCAAGGTTTCTTTCACCCTAATGTGTATCCATCTGGAACTGTTTGCTTGTCTATACTTAATGAAGATAGTGGGTGGAGACCAGCTATAACAGTGAAGCAAATTCTTGTGGGCATCCAAGACCTGCTTGATCAACCAAATCCTGCTGACCCTGCCCAGACGGAGGGTTATCATCTATTCATCCAGGATGCAGCTGAGTACAAGAGAAGAGTCCGACAGCAGTCAAAGCAATATCCACCTCTTGTCTAG

>Glyma11g05670.4   sequence type=CDS   gene model=Glyma11g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGTATCGCTCGTGGACGCCTTGCTGAGGAACGAAAGTCATGGCGCAAAAACCATCCACACGGTTTCGTTGCCAAGCCCGAGACTCTACCTGATGGCACCGTAAATTTGATGGTCTGGCATTGCACTATTCCTGGCAAGACCGGGACTGATTGGGAGGGTGGATATTTCCCACTGACAATGCACTTCAGTGAAGATTACCCTAGCAAGCCTCCCAAGTGCAAATTCCCTCAAGGTTTCTTTCACCCTAATGTGTATCCATCTGGAACTGTTTGCTTGTCTATACTTAATGAAGATAGTGGGTGGAGACCAGCTATAACAGTGAAGCAAATTCTTGTGGGCATCCAAGACCTGCTTGATCAACCAAATCCTGCTGACCCTGCCCAGACGGAGGGTTATCATCTATTCATCCAGGTCTGGATAACGTGTTAA

Predicted protein sequences of Glyma11g05670

Limit To All Plant Sequences

>Glyma11g05670.1   sequence type=predicted peptide   gene model=Glyma11g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGIARGRLAEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHCTIPGKTGTDWEGGYFPLTMHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQSKQYPPLV*

>Glyma11g05670.2   sequence type=predicted peptide   gene model=Glyma11g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGIARGRLAEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHCTIPGKTGTDWEGGYFPLTMHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSVSIFF*

>Glyma11g05670.3   sequence type=predicted peptide   gene model=Glyma11g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGIARGRLAEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHCTIPGKTGTDWEGGYFPLTMHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQSKQYPPLV*

>Glyma11g05670.4   sequence type=predicted peptide   gene model=Glyma11g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGIARGRLAEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHCTIPGKTGTDWEGGYFPLTMHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQVWITC*

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