Glyma11g05640 - SoyBase

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Report for Sequence Feature Glyma11g05640

Feature Type:	gene_model
Chromosome:	Gm11
Start:	3973892
stop:	3978011
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g05640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G67230	AT	Annotation by Michelle Graham. TAIR10: Nucleotide-diphospho-sugar transferases superfamily protein \| chr5:26822506-26824181 FORWARD LENGTH=492	SoyBase	E_val: 0	ISS
GO:0010417	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015018	GO-mf	Annotation by Michelle Graham. GO Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0042285	GO-mf	Annotation by Michelle Graham. GO Molecular Function: xylosyltransferase activity	SoyBase	N/A	ISS
KOG1476	KOG	Beta-1,3-glucuronyltransferase B3GAT1/SQV-8	JGI		ISS
PTHR10896	Panther	BETA-1,3-GLUCURONYLTRANSFERASE	JGI		ISS
PTHR10896:SF1	Panther	BETA-1,3-GLUCURONYLTRANSFERASE-RELATED	JGI		ISS
PF03360	PFAM	Glycosyltransferase family 43	JGI		ISS
UniRef100_I1LHB1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHB1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q4VZ79	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase n=1 Tax=Glycine max RepID=Q4VZ79_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g05640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g05640

Paralog	Evidence	Comments
Glyma01g39610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g05640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g053000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g05640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g05640

Limit To All Plant Sequences

>Glyma11g05640.1   sequence type=CDS   gene model=Glyma11g05640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTCTCGGCGTTGCAGCAGAGTTACCTCACGCGCCGGGCGAACAGCTTCAGAGGATCGGCGCAGTTGGATTCGTCCGCCGACGGCGCGGTGAAGTCGCCGGCGGCGATTTTCTGGCTTGTAATCCACGGCGTCTGCTGCCTCATCAGCTTGGTTCTCGGCTTCCGCTTCTCGCGCCTCGTCTTCTTCTTCCTCTTCTCGACAAGCCTCTACACCGCGCCGTTCCGGAGCGGTTCGGAAATCGCGGCTCCGCATGACGTTCCTCCGGCGGCGAACCGGACGGCGATGCTGAGCACCGCGAGCCGCGTGGTAGTCGGGCGGCACGGGATCCGAATCCGCCCGTGGCCGCATCCGGATCCCGTGGAGGTGATGAAGGCGCACCGCATAATCGAGAGAGTGCAGAGAGAGCAGAGGGCGCTGTTCGGAGTGAAAAACCCTAGGACGGTGATCGCGGTGACGCCGACGCACGTTCGCACGTTCCAGACGCTGCATTTGACCGGTGTGATGCACGCGCTGATGCTGGTGCCGTACGATCTGGTGTGGATCGTGGTGGAGGCCGGTGGAGTCACCAACGAAACCGCCTCAATTATCGCCAAGTCAGGCCTCAGAACAATCCACGTTGGCTTTTCTCAGCGAATGCCGAATTCGTGGGAAGCTAGGCATAAACTCGAGTCTCGGATGCGACTTCATGCTTTGAGAATTGTGAGAAAAGAGAAGCTGGATGGAGTTGTGGTGTTTGCTGATGATAGTAATATGCACAGTATGGAGTTGTTTGATGAGGCGCAAAATGTGAACTGGATTGGGGCTGTTTCGGTTGGAATTTTGCTTCATTCGGATGAATCTTCGTATATGGTTCAAAGTGAGGAGGAAGGTGCTTCTATGCCTGTGCAGGGTCCTGCTTGTAATGCTACGGATAAATTGGTTGGGTGGCATACTTTCAATTCGTTGCAGTATACGGGGAGGAGTGCGGTTTATATTGATGACAGGGCGCCTGTGCTGCCCAGAAAGCTTGAGTGGTCTGGGTTTGTGTTGAATTCCAGGTTGGTTTGGAAGGATGTGGATGGTAAGCCAGAGTGGGTTAAGGATCTTGATAAATTTGATGGGGTTGATGAAGAGATAGAGACTCCATTGTCCTTGCTCAAGAGCACCTCTGTGGTAGAGCCGCTTGGGAATTGTGGACGGCAAGTTTTGCTTTGGTGGCTGAGGGTTGAAGCTCGCACAGACAGCAAATTTCCTTCTCGATGGATAATTGACCCTCCTTTGGACATCACTATCCCATCAAAACGCAGTCCATGGCCAGATGCTCCTCCTGAGCTCCCATCTAATGAAAAAGTTTTAACCAACACACAAGAGCAGACAAACAAGCCCTCTACAAGAACCAAATCACCCAGATCCCGGCGCAGTAGAAGCAAGAAAAAGCATGATACCAAAGTGATAGGTGTGCAAGTCTCAACATATTCCGAACAAAACTAA

Predicted protein sequences of Glyma11g05640

Limit To All Plant Sequences

>Glyma11g05640.1   sequence type=predicted peptide   gene model=Glyma11g05640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLSALQQSYLTRRANSFRGSAQLDSSADGAVKSPAAIFWLVIHGVCCLISLVLGFRFSRLVFFFLFSTSLYTAPFRSGSEIAAPHDVPPAANRTAMLSTASRVVVGRHGIRIRPWPHPDPVEVMKAHRIIERVQREQRALFGVKNPRTVIAVTPTHVRTFQTLHLTGVMHALMLVPYDLVWIVVEAGGVTNETASIIAKSGLRTIHVGFSQRMPNSWEARHKLESRMRLHALRIVRKEKLDGVVVFADDSNMHSMELFDEAQNVNWIGAVSVGILLHSDESSYMVQSEEEGASMPVQGPACNATDKLVGWHTFNSLQYTGRSAVYIDDRAPVLPRKLEWSGFVLNSRLVWKDVDGKPEWVKDLDKFDGVDEEIETPLSLLKSTSVVEPLGNCGRQVLLWWLRVEARTDSKFPSRWIIDPPLDITIPSKRSPWPDAPPELPSNEKVLTNTQEQTNKPSTRTKSPRSRRSRSKKKHDTKVIGVQVSTYSEQN*

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