SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G67270 | AT | Annotation by Michelle Graham. TAIR10: end binding protein 1C | chr5:26840248-26841984 REVERSE LENGTH=329 | SoyBase | E_val: 7.00E-149 | ISS |
| GO:0009652 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thigmotropism | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone phosphorylation | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0030865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cortical cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005819 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: spindle | SoyBase | N/A | ISS |
| GO:0009524 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast | SoyBase | N/A | ISS |
| GO:0008017 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: microtubule binding | SoyBase | N/A | ISS |
| KOG3000 | KOG | Microtubule-binding protein involved in cell cycle control | JGI | ISS | |
| PTHR10623 | Panther | MICROTUBULE-ASSOCIATED PROTEIN, RP/EB FAMILY | JGI | ISS | |
| PF00307 | PFAM | Calponin homology (CH) domain | JGI | ISS | |
| PF03271 | PFAM | EB1-like C-terminal motif | JGI | ISS | |
| UniRef100_G7K588 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Microtubule-associated protein RP/EB family member n=1 Tax=Medicago truncatula RepID=G7K588_MEDTR | SoyBase | E_val: 5.00E-165 | ISS |
| UniRef100_I1LHA3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHA3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g05560 not represented in the dataset |
Glyma11g05560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g39720 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g052200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g05560.2 sequence type=CDS gene model=Glyma11g05560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAAAGTGAAAGAAATGGAGATGGATTGTAGCAAGAAATGGGATTTTGAATTTGAAATACTACCGCTCCCGTCTCCATATATATCCTTTCTTTGTGAAAGAGCCGTTAGAAGAAACGAGAGCGAGAGAGAGAAAGAAATGGCGACCAACATTGGGATCATGGATGCGGCTTACTTCGTCGGCAGATCTGAGATTCTTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAGGCTTGTTCCGGCGCCGTTCATTGTCAGCTTCTCGATGCCGCTCATCCAGGGATCGTGCCTATGCACAAGGTCAATTTCGACGCCAAGAGCGAGTACGAGATGATTCAGAACTACAAGGTCCTTCAAGATGTCTTCAACAAACTCAAAATCACCAAGCACATCGAGGTCAGCAAGCTGGTGAAAGGAAGGCCACTGGATAACCTCGAGTTCATGCAATGGATGAAACGATACTGCGATTCTGTCGATTCCGGCCTTCAGTACAATTATAATCCTCTGGAGAGGAGAGAGGTTTGCAAAGGAGGAAGAGAAACGAGCAAGAAATCTGCAAACTCCCAAGCCTCAACCAAGGGTTCTACTGCACAGAGACCTCATTCTTCTCATAATGCTCGAAGAAATGAGGTTTCTAATGCAAACCCTACAAATCAGGCTGCAAAGGTTGCGAGAGCAGCACCTTCTGCTGGAAACCCTGCTCCTGTGTATGAAGAAAAGATAACAGAGTTGAAGTTGTCCATTGATAGCCTTGAGAAGGAACGAGATTTCTACTTCGCAAAGCTGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGATTGTTGCGGCAATACAGAAGATATTATATGCTACAGATGACAATGGAATGGCTGTGGTCGAAGCTCAAGCTATGATTTCTGTTGGTCGTAAGGAAATAGAGGGATTAAGCCCCATTGCTGAGGTTTCGGAGGAGAAGAGCAGTTCAGAAACTCATAAGAGAAAGAATATTGCCAATATTGATTTTGATGTTGCTGGCCTCGCAACGTTGTCTCCCAGACAGAGGCTTTCTGATGTTTCAGATGTTCATTGTAGCGAGTCACCTCTTATGACTTGTTAG
>Glyma11g05560.2 sequence type=predicted peptide gene model=Glyma11g05560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVKVKEMEMDCSKKWDFEFEILPLPSPYISFLCERAVRRNESEREKEMATNIGIMDAAYFVGRSEILSWINSTLQLNLSKVEEACSGAVHCQLLDAAHPGIVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVDSGLQYNYNPLERREVCKGGRETSKKSANSQASTKGSTAQRPHSSHNARRNEVSNANPTNQAAKVARAAPSAGNPAPVYEEKITELKLSIDSLEKERDFYFAKLRDIEILCQTPEIEHSPIVAAIQKILYATDDNGMAVVEAQAMISVGRKEIEGLSPIAEVSEEKSSSETHKRKNIANIDFDVAGLATLSPRQRLSDVSDVHCSESPLMTC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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