|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G67320 | AT | Annotation by Michelle Graham. TAIR10: WD-40 repeat family protein | chr5:26857268-26860974 FORWARD LENGTH=613 | SoyBase | E_val: 0 | ISS |
GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
GO:0016572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone phosphorylation | SoyBase | N/A | ISS |
GO:0016575 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone deacetylation | SoyBase | N/A | ISS |
GO:0016579 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein deubiquitination | SoyBase | N/A | ISS |
GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0005834 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex | SoyBase | N/A | ISS |
GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
KOG0273 | KOG | Beta-transducin family (WD-40 repeat) protein | JGI | ISS | |
PTHR22846 | Panther | WD40 REPEAT PROTEIN | JGI | ISS | |
PTHR22846:SF2 | Panther | TRANSDUCIN BETA-LIKE 1 | JGI | ISS | |
PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
PF08513 | PFAM | LisH | JGI | ISS | |
UniRef100_G7K578 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F-box-like/WD repeat-containing protein TBL1XR1 n=1 Tax=Medicago truncatula RepID=G7K578_MEDTR | SoyBase | E_val: 0 | ISS |
UniRef100_I1LH99 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LH99_SOYBN | SoyBase | E_val: 0 | ISS |
Glyma11g05524 not represented in the dataset |
Glyma11g05524 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.11g051700 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g05524.1 sequence type=CDS gene model=Glyma11g05524 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTTCCGTCACCTCCGTCGAACTCAACCTTCTCGTCTTTCGCTACTTTCAGGAATCAGGTTTCACACATGCTGCTTTTGCATTTGGAAACGAGGCTAGTATTAACAAAAGCCCCATTGATGGAAAGTTGATACCACCAGGTGCTCTTATTACACTTGTTCAGAAGGGGCTACAGTACTTGGAGATGGAAGCAAACTTGAGTAATTGTGATGCAGACCTGGATGAAGACTTTTCATTCTTGCAACCTTTGGATCTTATCACAAAAGATGTGCATGAACTTAGGAAAATGGTTAATGAAAGAAGGAAAATACTACAGAAGAATAGAAATAAGGAATCTGAAAAGGAGAATGAAGGTGGGCGAGGATGGTTAAAAGAAAAGGGAAGACATGAAAGGGAGAAAGAATGTGAAAGGGATGGAGAGAAGGCAGAAAATCTTAAAGAGCTAGAACAACAGCATTACAATCAGAGCTGTAGAGAAATGGTCATAGATCAAGAAGATTTGGTTACTGTAAAGCATGCAGAGAACAAAGCATTTGGAGGGACAGAACCAATGGATGTCTCTACAACATCAACATTGCAACCATGTCAAATTCCTAGGTCAGATGTGATAGTTTTGGAAGGGCATACTTCAGAGGTGTGTGCTTGTGCATGGAGTCCTACAGGATCTCTTCTAGCATCAGGGTCTGGGGATTCAACAGCTCGTATTTGGACAATAGCAGAAGGGAGATGCAAATCTGCTTTGCTGAATGGCCCTCCGAATGTATTGGTGTTGAAGCATGTTAGGGGTAAAACAAATGAAAAGAGTAACGATGTCACTACACTTGATTGGAATGGGGAGGGGACACTACTTGCAACTGGTTCATATGATGGGCAAGCGAGAATTTGGACCACCAATGGTGAACTGAAGAGTACATTAAGCAAACACAAGGGACCCATATTCTCTTTGAAATGGAATAAGAAAGGTGATTATATTCTCACTGGAAGCTGTGATCAAACTGCAATTGTATGGGATGTGAAAGCTGAGGAATGGAAACAACAATTTGAATTTCATTCAGGTTGGACTCTTGATGTTGACTGGCGCAACAATGTGTCATTTGCAACAAGCTCAACAGACACTAAGATACATGTTTGCAAGATTGGGGAAAACCTCCCCATAAGAACTTTTGTTGGGCACCAGAGTGAAGTTAATTGTATCAAATGGGATCCCACTGGTTCATTATTAGCCTCATGTTCTGATGATATGACTGCAAAGATATGGAGTATGAAACAAGATAAATATCTTCATGAGTTTAGGGAGCATTCCAAGGAGATATATACTATCAGATGGAGCCCAACTGGTCCCGGTACAAATAACCCTAATAAAAATTTGGTGTTGGCTAGTGCATCATTTGATTCAACGGTAAAGCTATGGGATGTGGAACTTGGGAAACTTTTATACAGCTTGAATGGACACAGAGATCGTGTATATTCTGTTGCATTCAGTCCCAATGGTGAGTACATAGCCAGTGGGTCTCCTGACAGATCGATGCTCATATGGTCCTTGAAGGAAGGCAAGATCGTTAAAACCTACACTGGTGATGGAGGCATTTTTGAGGTCTGTTGGAATAAGGAGGGTGACAAGATCGCTGCCTGTTTTGCCAATAATACAGTTTGTGTTTTGGATTTCAGAATGTAA
>Glyma11g05524.1 sequence type=predicted peptide gene model=Glyma11g05524 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTSVTSVELNLLVFRYFQESGFTHAAFAFGNEASINKSPIDGKLIPPGALITLVQKGLQYLEMEANLSNCDADLDEDFSFLQPLDLITKDVHELRKMVNERRKILQKNRNKESEKENEGGRGWLKEKGRHEREKECERDGEKAENLKELEQQHYNQSCREMVIDQEDLVTVKHAENKAFGGTEPMDVSTTSTLQPCQIPRSDVIVLEGHTSEVCACAWSPTGSLLASGSGDSTARIWTIAEGRCKSALLNGPPNVLVLKHVRGKTNEKSNDVTTLDWNGEGTLLATGSYDGQARIWTTNGELKSTLSKHKGPIFSLKWNKKGDYILTGSCDQTAIVWDVKAEEWKQQFEFHSGWTLDVDWRNNVSFATSSTDTKIHVCKIGENLPIRTFVGHQSEVNCIKWDPTGSLLASCSDDMTAKIWSMKQDKYLHEFREHSKEIYTIRWSPTGPGTNNPNKNLVLASASFDSTVKLWDVELGKLLYSLNGHRDRVYSVAFSPNGEYIASGSPDRSMLIWSLKEGKIVKTYTGDGGIFEVCWNKEGDKIAACFANNTVCVLDFRM*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||