Glyma11g05517 - SoyBase

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Report for Sequence Feature Glyma11g05517

Feature Type:	gene_model
Chromosome:	Gm11
Start:	3863864
stop:	3864155
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g05517

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_I1J9B2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9B2_SOYBN	SoyBase	E_val: 5.00E-11	ISS

Expression Patterns of Glyma11g05517

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g05517 not represented in the dataset	Glyma11g05517 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g05517

Paralog	Evidence	Comments
Glyma01g39770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g05517 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma11g05517

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g05517

Limit To All Plant Sequences

>Glyma11g05517.1   sequence type=CDS   gene model=Glyma11g05517   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAACCAAAAACACGGTGTGGCGCTGCGGATCTCTCTCTCGGTCGTTGCTCTCCGCCGCGAGAACCACTCCAAATCGTTCCTCCATTTCTCTCCTTCACTGTCCTTCTTCGCCTTCCCTACGCTCTCATCTTCTCCACCCTCGCCGTCCCCTCATTACACTCCTTAGGACTGTGGGAATTCTCGGGTGCACGTAG

Predicted protein sequences of Glyma11g05517

Limit To All Plant Sequences

>Glyma11g05517.1   sequence type=predicted peptide   gene model=Glyma11g05517   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
KTKNTVWRCGSLSRSLLSAARTTPNRSSISLLHCPSSPSLRSHLLHPRRPLITLLRTVGILGCT*

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