Report for Sequence Feature Glyma11g05390
Feature Type: gene_model
Chromosome: Gm11
Start: 3768433
stop: 3771931
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g05390
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G67370 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1230) | chr5:26877667-26879465 REVERSE LENGTH=327
SoyBase E_val: 2.00E-141 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF06799 PFAM
Protein of unknown function (DUF1230)
JGI ISS
UniRef100_I1LH85 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LH85_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9FN15 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAC18972.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FN15_ARATH
SoyBase E_val: 8.00E-139 ISS
Expression Patterns of Glyma11g05390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma11g05390
Paralog Evidence Comments
Glyma01g39890 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g05390 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g050500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g05390
Coding sequences of Glyma11g05390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g05390.1 sequence type=CDS gene model=Glyma11g05390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATTAGACAAAATGTCTACTGTTCACTAATTCCAAGTGCAAGACAAGCCAGACCAGGCAACAGTTATGGCTCATTGATCATCCATAATCACAAAGCTTCAAAATTTTCTCACCGGATTTCCATCAAGGCTAAGGCCATAAAAGATGAGATGGATGGAGAAACAAGCGGATCTTCAGGACGTAGCTGGGATCCTGGGTTGGAAATTGAAGTCCCTTTTGAGCAGAGGCCGGTGAATGAGTACTCATCTCTAAAGGATGGAATCTTGTATTCGTGGGGTGAACTGGGTCCGGGGTCGTTCTTCCTTCGCCTTGGAAGTCTCTGGCTGGCAGTATTTACAGTTCTTGGAGGACCAATTGCAGCTGCAAGCTTTAATCCTTCTAAAGAGCCTCTAAGATTTATACTAGCTGCTGGAACGGGAACTCTCTTCATTGTGTCTTTGATTGTCTTGAGGATTTATCTGGGTTGGAGTTATGTCGGTGACAGACTTCTATCAGCGGTCATCCCTTATGAAGAAAGCGGATGGTACGATGGACAGATGTGGGTCAAGCCACCCGAGATCCTAGCTCGTGATAGATTGTTGGGCTCTTACAAGGTTAAACCAGTCGTTAAACTGCTGAAGCAAACTCTAGTTGGGACAGGAGCATTGCTTGTTACAGGAGTAATGCTATTTATCTTTGCTACACCAGTGGAGAATTTTTTTCGAACTACCTTTACCAAAGAAGAAATTAAATCAACTGTTCAAGCTCCCAAGGTTAACACAAAGCTCCTAAGAAAAGAGGAGTTGCTTAAATTGCCAGTGGAGGTGATAACTGATGATGATCTAGCAGCAGCTGCTGCTGAGGCTGCTGATGGAAGACCTGTCTATTGTAGGGATAGGTATTATCGAGCATTAGCAGGAGGGCAGTACTGCAAATGGGAAGATCTGCTCAAATAA
Predicted protein sequences of Glyma11g05390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g05390.1 sequence type=predicted peptide gene model=Glyma11g05390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIRQNVYCSLIPSARQARPGNSYGSLIIHNHKASKFSHRISIKAKAIKDEMDGETSGSSGRSWDPGLEIEVPFEQRPVNEYSSLKDGILYSWGELGPGSFFLRLGSLWLAVFTVLGGPIAAASFNPSKEPLRFILAAGTGTLFIVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPEILARDRLLGSYKVKPVVKLLKQTLVGTGALLVTGVMLFIFATPVENFFRTTFTKEEIKSTVQAPKVNTKLLRKEELLKLPVEVITDDDLAAAAAEAADGRPVYCRDRYYRALAGGQYCKWEDLLK*