Glyma11g05150 - SoyBase

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Report for Sequence Feature Glyma11g05150

Feature Type:	gene_model
Chromosome:	Gm11
Start:	3572463
stop:	3576832
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g05150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49900	AT	Annotation by Michelle Graham. TAIR10: Phototropic-responsive NPH3 family protein \| chr3:18500635-18502614 REVERSE LENGTH=517	SoyBase	E_val: 7.00E-105	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
PF00651	PFAM	BTB/POZ domain	JGI		ISS
PF03000	PFAM	NPH3 family	JGI		ISS
UniRef100_D7LSZ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BTB/POZ domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LSZ7_ARALL	SoyBase	E_val: 3.00E-102	ISS
UniRef100_UPI00023377DB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023377DB related cluster n=1 Tax=unknown RepID=UPI00023377DB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g05150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g05150

Paralog	Evidence	Comments
Glyma01g40161	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g05150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g048000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g05150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g05150

Limit To All Plant Sequences

>Glyma11g05150.2   sequence type=CDS   gene model=Glyma11g05150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCATGGAAATAACAGTAGAGCATTCAGACACCCTTGAAAACCGTGTGTTTTCATTCAAAGCCAAGGTCACCGATGAGATGAGGGGTTGGAACCAATTCGAGACCATCTACGAGGAAGAACGCGAGTTCTCTTCAACCTCCTCTCCCTCTCTTTCACCATCCTCCTCCTCTTCTCCTCCTCCATCACTCCACTCCATAGTCAATGCTTGGTCTCTTGACTCCGGCTGTGAACCAGATGTCTTGATATGTGTTCAAGGAACCTCTTTTCGTCTGCACAAGGCTCGTCTGATATCAAGAAGTTCATACCTCAAACGGTATCTAACGGGAGTTTCTAACCTAACTCTCTCCCCGCCGTTAAACATAACGGCCGAGACTTTCGCTGCGGTGGCTGAATTCTGTTACAGCCGCAGAGTCCACTTAACGCCGAGTAACGTTGCCACCGTTAGAGTGGCGGCGGAGTTATTGGGCATGACGGGAGAAGAGAATCTCCGTGAAGTAACCGAATCGTATTTTGAGAGAGTCGTTGGCATTGACGCGTCGATGGTTCTGCGCTCGTGCGTGGCTCTGCTCCCCGAATCCGAAACGACGGCGTCGCTTGCCAGCAGGTGTATTGAAGCGCTGGTTTGGGAAGACGACGTTTCGTGTTTAAACGACGTCGTAGGTATGCACCCTCAGGATTTTCAAACGGTATCGTATTCACTGAACAGAAGGTTACACAACCACGACGTTCTATACAAGATGGTTGATCTTTATCTCAAGGAAAACAAGTACGGTAAACTAACAGAGGAACAGAAATCGGAGATATGCAACAGCATAGACTGTTCTAGGCTCTCGTCTCACACTCTCGTTGACTGTGTTCAAAACCCACGAATGCCGCTCAGATTCATAGTGAGAGCGATACTCATGGAGCATCTCAACACTCGCCGCTCCGTCACTGCGGCGGCCAGGGCCCCGGCCACCACCGGTGCACAACAACAACCAGAACGAACGTCCCTAAGAGAAATTCTGCAGCGTGACACGGCTGATCGCGAAACGACACAGATCAAAGAGACCATGGATTCCACCTACTCTCGTATTCAAAGCCTCGAGAGAGAACTTAGGGGCATGAAGAAGATCCTTCATGAACATCACCAAGCGGAGGATGACACAAGGAATAATAATAATGTGTTGAACTCAGAGCGTTTCGCAAGTTTCCATTTTGTTCCAGCAGATGCAGAGAGCAGTAAAATACAGAGGGGAGGAAGAGGGTCTGTTTCGTCTTCGGGTTTTGTGCTTGACAACGTAAGGAGGAAAAATAAGGAAGTGGCCGGGGGGATGTGCAATTTGTCTGTGGGATCATCATGTCATGACGATAGCAAGACCCCAAAGATGACCAAGTTTCTTCGCCATAGTAAGCTCATAACTGGTCTCAAGCATGCATTTCGGATATCAAAGTCTACGTCAAACACTACTGAAGAAACTTAG

Predicted protein sequences of Glyma11g05150

Limit To All Plant Sequences

>Glyma11g05150.2   sequence type=predicted peptide   gene model=Glyma11g05150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASMEITVEHSDTLENRVFSFKAKVTDEMRGWNQFETIYEEEREFSSTSSPSLSPSSSSSPPPSLHSIVNAWSLDSGCEPDVLICVQGTSFRLHKARLISRSSYLKRYLTGVSNLTLSPPLNITAETFAAVAEFCYSRRVHLTPSNVATVRVAAELLGMTGEENLREVTESYFERVVGIDASMVLRSCVALLPESETTASLASRCIEALVWEDDVSCLNDVVGMHPQDFQTVSYSLNRRLHNHDVLYKMVDLYLKENKYGKLTEEQKSEICNSIDCSRLSSHTLVDCVQNPRMPLRFIVRAILMEHLNTRRSVTAAARAPATTGAQQQPERTSLREILQRDTADRETTQIKETMDSTYSRIQSLERELRGMKKILHEHHQAEDDTRNNNNVLNSERFASFHFVPADAESSKIQRGGRGSVSSSGFVLDNVRRKNKEVAGGMCNLSVGSSCHDDSKTPKMTKFLRHSKLITGLKHAFRISKSTSNTTEET*

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