Glyma11g05140 - SoyBase

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Report for Sequence Feature Glyma11g05140

Feature Type:	gene_model
Chromosome:	Gm11
Start:	3567088
stop:	3570848
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g05140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G14750	AT	Annotation by Michelle Graham. TAIR10: APS kinase \| chr2:6314128-6315501 FORWARD LENGTH=276	SoyBase	E_val: 3.00E-116	ISS
GO:0000103	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfate assimilation	SoyBase	N/A	ISS
GO:0010439	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0016310	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorylation	SoyBase	N/A	ISS
GO:0048232	GO-bp	Annotation by Michelle Graham. GO Biological Process: male gamete generation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0004020	GO-mf	Annotation by Michelle Graham. GO Molecular Function: adenylylsulfate kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0635	KOG	Adenosine 5'-phosphosulfate kinase	JGI		ISS
PTHR11055	Panther	ADENYLSULFATE KINASE/SULFATE ADENYLTRANSFERASE	JGI		ISS
PF01583	PFAM	Adenylylsulphate kinase	JGI		ISS
UniRef100_C6TL96	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TL96_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LH62	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Adenylyl-sulfate kinase n=1 Tax=Glycine max RepID=I1LH62_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g05140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g05140 not represented in the dataset	Glyma11g05140 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g05140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g047900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g05140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g05140

Limit To All Plant Sequences

>Glyma11g05140.1   sequence type=CDS   gene model=Glyma11g05140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTCTGTACAAGCACTGTGTCAAGCGTGTAGTTGTGCAATGTTCCAGAACATCGAATGTAAGCTGGGGTTCGCAAAGTTCTGTGGAATCAATGCTGTTGGATTAAGCCGTGGTCGTAAAAGCTTGTTGAAGCCGATTATGGCTAAGGAAGATCACGGCGCGTCTTTGATCGATGACGGTAATCCTAAATGCCAGGGACATCAAGTCAACAAGCCTAATGGCATCAATCAATCTACTGCATTATCTGGTAAAAGTCTTACCGAGATGTCAAATATTGGGAATTCGATGAATATTTTGTGGCACGAATGTCCAATCCAGAAACTTGATAGACAGCAGCTACTTCAGCAAAAGGGCTGCGTCATATGGTTAACAGGTCTCAGTGGTTCAGGAAAAAGCACTCTGGCATGTGCTTTGAGTAGAAGCTTGCACTCCAAAGGAAAGTTGACTTATATCCTTGATGGTGACAATATTCGACATGGTCTAAACCGTGATCTTAGTTTTAGAGCAGAAGATCGATCAGAGAACATACGAAGGATTGGTGAGGTATCAAAACTCTTGGCAGATGCAGGTGTTATTTGTATTGCCAGTTTAATATCACCCTACCGAAAGGATAGGGATGCTTGCCGAGCTCTATTGCCAGAGGGGGATTTTATTGAGGTTTTCATAGACGTGCCACTGGATGTGTGTGAAGCAAGAGACCCAAAGGGACTTTACAAGCTTGCTCGAGCTGGAAAGATTAAAGGTTTCACAGGGATAGATGATCCATATGAACCACCGTACAGTTGTGAGATAGTATTACAGCAAAAAGGAAGTGAATGCATGTCTCCAAGTGATACGGCAGAAATAGTAATATCCTACTTGGAGAAAAATGGATACCTCCTGGCCTGA

Predicted protein sequences of Glyma11g05140

Limit To All Plant Sequences

>Glyma11g05140.1   sequence type=predicted peptide   gene model=Glyma11g05140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSVQALCQACSCAMFQNIECKLGFAKFCGINAVGLSRGRKSLLKPIMAKEDHGASLIDDGNPKCQGHQVNKPNGINQSTALSGKSLTEMSNIGNSMNILWHECPIQKLDRQQLLQQKGCVIWLTGLSGSGKSTLACALSRSLHSKGKLTYILDGDNIRHGLNRDLSFRAEDRSENIRRIGEVSKLLADAGVICIASLISPYRKDRDACRALLPEGDFIEVFIDVPLDVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPYSCEIVLQQKGSECMSPSDTAEIVISYLEKNGYLLA*

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