Report for Sequence Feature Glyma11g05110
Feature Type: gene_model
Chromosome: Gm11
Start: 3551979
stop: 3555671
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g05110
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G37650 AT
Annotation by Michelle Graham. TAIR10: GRAS family transcription factor | chr4:17691871-17693466 FORWARD LENGTH=531
SoyBase E_val: 0 ISS
GO:0007049 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell cycle
SoyBase N/A ISS
GO:0008356 GO-bp
Annotation by Michelle Graham. GO Biological Process: asymmetric cell division
SoyBase N/A ISS
GO:0009956 GO-bp
Annotation by Michelle Graham. GO Biological Process: radial pattern formation
SoyBase N/A ISS
GO:0032350 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of hormone metabolic process
SoyBase N/A ISS
GO:0048366 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf development
SoyBase N/A ISS
GO:0055072 GO-bp
Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
PF03514 PFAM
GRAS family transcription factor
JGI ISS
UniRef100_G7K2I5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GRAS family transcription factor n=1 Tax=Medicago truncatula RepID=G7K2I5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1LH59 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LH59_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma11g05110
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma11g05110
Paralog Evidence Comments
Glyma01g40180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g05110 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g047700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g05110
Transcripts of Glyma11g05110
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g05110.2 sequence type=transcript gene model=Glyma11g05110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACCTAGAAAAGAAACCGAACCCCACTTCCCTTCCCCCCGCACATCGATTCCACAAAAAAGAGAAGATAGCATAGCATACCTCAATTTCAATCAAAACCACTACACTACAAATACACCACACAACTCGATTACATTTTTATTTCCACCTCACCCTCAGCAAAATTAACCAACTAACATATAGTATATCACTAATAATTAACTTTGTACATATATAGTAAGGTAAGTAGTATAATGGAATAGAATAAAGCGATCCCATTCGAAATTTCCAATTCCCACCGTTAAAAACACGTTACGTCCCATTTTCATTCTTTGCTTGCTTGCGCTGGGACGTGACCATATCCCATGCGAGAGTCAAAGTTTAGTGTGACAACAAAGGGTTAATAACCTTAAATGGATACCACGTTGTTTAGAGTAGTGAGTAGTTTCCAACATCACCAAGCTGATCAAGATCATCAATCCCTCAACAACTCCACCACAAGCAGCAGCTCTCGATCCTCCAGACAAGAGCAAAACTATCCCTACCCACAAGAACACGACGAAGAATGCTTCAACTTTTTCATGGATGATGAAGACTTATCCTCGTCTTCTTCCAAGCACTACTATCCCTATCAACCCCACCCTCCCTCCACTACCGACCATTCCTTCTCCCCCACTCCCGGCGTCGACGTTGTCTTCCCCTTCGAGTTCTCCTCCGGAAAGTGGGCCCAGGACATCCTCCTCGAAACCGCACGTGCCGTTGCCGACAAGAACACCACCCGCCTTCAACAACTCATGTGGATGCTAAACGAGCTCAGCTCCCCCTACGGCGACACCGACCAGAAACTAGCCTCGTACTTCCTCCAAGCCTTCTTCAGCCGCATCACCCAAGCCGGGGACCGAACCTACAAAACCTTAGCTTCAGCTTCCGAGAAAACATGCTCCTTCGAATCAACCCGCAAGACGGTGCTGAAGTTCCAAGAGTTGAGTCCCTGGACAACCTTCGGCCACGTGGCATCCAATGGCGCCATCTTAGAAGCCTTGGAAGGAGAGCCCAAACTACACATAGTTGACATCAGCAACACCTATTGCACCCAATGGCCAACCCTCTTCGAAGCCTTGGCAACTCGAAACGATGACACTCCGCATCTCCGTTTAACCTCCGTCGTCACCGCCGGCGCCACCGCGCAGAAGGTCATGAAGGAAATCGGAGCCAGAATGGAGAAATTCGCCAGACTCATGGGCGTGCCCTTTAAATTCAACGTCGTTCATCATGTAGGTCAACTCTCTGACCTCGATTTCAGTGTGCTAGATATTAAAGAAGACGAGGCGTTGGCGATTAACTGTGTTAACACCTTGCATTCGATCGCCGCCGTGGGGAACCACCGTGACGCGGTTATATCTTCGTTGAGGAGGTTGAAACCGAGGATCGTGACGGTGGTGGAGGAGGAGGCTGATTTGGACATTGGATTGGAAGGGTTTGAGTTCGTGAAAGGGTTTGAAGAGTGTTTGAGGTGGTTTAGGGTTTACTTTGAGGCCTTGGACGAGAGTTTTCCGCGGACGAGCAACGAGCGTTTGATGCTTGAGAGGGCGGCGGGGAGGGCGGTGGTGGACCTGGTGGCGTGTTCTCCGGCGGATTCCGTAGAGAGGCGGGAGAAGGCGGCGCGGTGGGCGAGGAGGATGCATGGAGGTGGGGGGTTCAATACGGTGGCGTTTAGCGAAGAGGTATGCGATGATGTGAGGGCGTTGTTGAGGAGGTATAGGGAAGGGTGGGCAATGACACAGTGCTCCGACGCCGGAATATTCCTGACGTGGAAGGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGGGCCTTGACGTAGAGTAGAGGAGAATGACTTGACGTGAGTAAGGTGTTGAGGGACGGATTCCCACGTGCTCTCTGTTCCGGAAACACGTGCCCAACGCTGAGGGTTCTTTTTTTCTTTTTTCTTTTAAGGTTTAAGCTTTTGTATCCTTTTCTATAGCTATGACAACGACAAGCTGATGTCTTTATATTTTAATGGGGCCAAGTTCATGTAGAATGCTAACTCCAGTGTATTAATT
Coding sequences of Glyma11g05110
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g05110.1 sequence type=CDS gene model=Glyma11g05110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATACCACGTTGTTTAGAGTAGTGAGTAGTTTCCAACATCACCAAGCTGATCAAGATCATCAATCCCTCAACAACTCCACCACAAGCAGCAGCTCTCGATCCTCCAGACAAGAGCAAAACTATCCCTACCCACAAGAACACGACGAAGAATGCTTCAACTTTTTCATGGATGATGAAGACTTATCCTCGTCTTCTTCCAAGCACTACTATCCCTATCAACCCCACCCTCCCTCCACTACCGACCATTCCTTCTCCCCCACTCCCGGCGTCGACGTTGTCTTCCCCTTCGAGTTCTCCTCCGGAAAGTGGGCCCAGGACATCCTCCTCGAAACCGCACGTGCCGTTGCCGACAAGAACACCACCCGCCTTCAACAACTCATGTGGATGCTAAACGAGCTCAGCTCCCCCTACGGCGACACCGACCAGAAACTAGCCTCGTACTTCCTCCAAGCCTTCTTCAGCCGCATCACCCAAGCCGGGGACCGAACCTACAAAACCTTAGCTTCAGCTTCCGAGAAAACATGCTCCTTCGAATCAACCCGCAAGACGGTGCTGAAGTTCCAAGAGTTGAGTCCCTGGACAACCTTCGGCCACGTGGCATCCAATGGCGCCATCTTAGAAGCCTTGGAAGGAGAGCCCAAACTACACATAGTTGACATCAGCAACACCTATTGCACCCAATGGCCAACCCTCTTCGAAGCCTTGGCAACTCGAAACGATGACACTCCGCATCTCCGTTTAACCTCCGTCGTCACCGCCGGCGCCACCGCGCAGAAGGTCATGAAGGAAATCGGAGCCAGAATGGAGAAATTCGCCAGACTCATGGGCGTGCCCTTTAAATTCAACGTCGTTCATCATGTAGGTCAACTCTCTGACCTCGATTTCAGTGTGCTAGATATTAAAGAAGACGAGGCGTTGGCGATTAACTGTGTTAACACCTTGCATTCGATCGCCGCCGTGGGGAACCACCGTGACGCGGTTATATCTTCGTTGAGGAGGTTGAAACCGAGGATCGTGACGGTGGTGGAGGAGGAGGCTGATTTGGACATTGGATTGGAAGGGTTTGAGTTCGTGAAAGGGTTTGAAGAGTGTTTGAGGTGGTTTAGGGTTTACTTTGAGGCCTTGGACGAGAGTTTTCCGCGGACGAGCAACGAGCGTTTGATGCTTGAGAGGGCGGCGGGGAGGGCGGTGGTGGACCTGGTGGCGTGTTCTCCGGCGGATTCCGTAGAGAGGCGGGAGAAGGCGGCGCGGTGGGCGAGGAGGATGCATGGAGGTGGGGGGTTCAATACGGTGGCGTTTAGCGAAGAGGTATGCGATGATGTGAGGGCGTTGTTGAGGAGGTATAGGGAAGGGTGGGCAATGACACAGTGCTCCGACGCCGGAATATTCCTGACGTGGAAGGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGGGCCTTGACGTAG
>Glyma11g05110.2 sequence type=CDS gene model=Glyma11g05110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATACCACGTTGTTTAGAGTAGTGAGTAGTTTCCAACATCACCAAGCTGATCAAGATCATCAATCCCTCAACAACTCCACCACAAGCAGCAGCTCTCGATCCTCCAGACAAGAGCAAAACTATCCCTACCCACAAGAACACGACGAAGAATGCTTCAACTTTTTCATGGATGATGAAGACTTATCCTCGTCTTCTTCCAAGCACTACTATCCCTATCAACCCCACCCTCCCTCCACTACCGACCATTCCTTCTCCCCCACTCCCGGCGTCGACGTTGTCTTCCCCTTCGAGTTCTCCTCCGGAAAGTGGGCCCAGGACATCCTCCTCGAAACCGCACGTGCCGTTGCCGACAAGAACACCACCCGCCTTCAACAACTCATGTGGATGCTAAACGAGCTCAGCTCCCCCTACGGCGACACCGACCAGAAACTAGCCTCGTACTTCCTCCAAGCCTTCTTCAGCCGCATCACCCAAGCCGGGGACCGAACCTACAAAACCTTAGCTTCAGCTTCCGAGAAAACATGCTCCTTCGAATCAACCCGCAAGACGGTGCTGAAGTTCCAAGAGTTGAGTCCCTGGACAACCTTCGGCCACGTGGCATCCAATGGCGCCATCTTAGAAGCCTTGGAAGGAGAGCCCAAACTACACATAGTTGACATCAGCAACACCTATTGCACCCAATGGCCAACCCTCTTCGAAGCCTTGGCAACTCGAAACGATGACACTCCGCATCTCCGTTTAACCTCCGTCGTCACCGCCGGCGCCACCGCGCAGAAGGTCATGAAGGAAATCGGAGCCAGAATGGAGAAATTCGCCAGACTCATGGGCGTGCCCTTTAAATTCAACGTCGTTCATCATGTAGGTCAACTCTCTGACCTCGATTTCAGTGTGCTAGATATTAAAGAAGACGAGGCGTTGGCGATTAACTGTGTTAACACCTTGCATTCGATCGCCGCCGTGGGGAACCACCGTGACGCGGTTATATCTTCGTTGAGGAGGTTGAAACCGAGGATCGTGACGGTGGTGGAGGAGGAGGCTGATTTGGACATTGGATTGGAAGGGTTTGAGTTCGTGAAAGGGTTTGAAGAGTGTTTGAGGTGGTTTAGGGTTTACTTTGAGGCCTTGGACGAGAGTTTTCCGCGGACGAGCAACGAGCGTTTGATGCTTGAGAGGGCGGCGGGGAGGGCGGTGGTGGACCTGGTGGCGTGTTCTCCGGCGGATTCCGTAGAGAGGCGGGAGAAGGCGGCGCGGTGGGCGAGGAGGATGCATGGAGGTGGGGGGTTCAATACGGTGGCGTTTAGCGAAGAGGTATGCGATGATGTGAGGGCGTTGTTGAGGAGGTATAGGGAAGGGTGGGCAATGACACAGTGCTCCGACGCCGGAATATTCCTGACGTGGAAGGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGGGCCTTGACGTAG
Predicted protein sequences of Glyma11g05110
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g05110.1 sequence type=predicted peptide gene model=Glyma11g05110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDTTLFRVVSSFQHHQADQDHQSLNNSTTSSSSRSSRQEQNYPYPQEHDEECFNFFMDDEDLSSSSSKHYYPYQPHPPSTTDHSFSPTPGVDVVFPFEFSSGKWAQDILLETARAVADKNTTRLQQLMWMLNELSSPYGDTDQKLASYFLQAFFSRITQAGDRTYKTLASASEKTCSFESTRKTVLKFQELSPWTTFGHVASNGAILEALEGEPKLHIVDISNTYCTQWPTLFEALATRNDDTPHLRLTSVVTAGATAQKVMKEIGARMEKFARLMGVPFKFNVVHHVGQLSDLDFSVLDIKEDEALAINCVNTLHSIAAVGNHRDAVISSLRRLKPRIVTVVEEEADLDIGLEGFEFVKGFEECLRWFRVYFEALDESFPRTSNERLMLERAAGRAVVDLVACSPADSVERREKAARWARRMHGGGGFNTVAFSEEVCDDVRALLRRYREGWAMTQCSDAGIFLTWKEQPVVWASAWRALT*
>Glyma11g05110.2 sequence type=predicted peptide gene model=Glyma11g05110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDTTLFRVVSSFQHHQADQDHQSLNNSTTSSSSRSSRQEQNYPYPQEHDEECFNFFMDDEDLSSSSSKHYYPYQPHPPSTTDHSFSPTPGVDVVFPFEFSSGKWAQDILLETARAVADKNTTRLQQLMWMLNELSSPYGDTDQKLASYFLQAFFSRITQAGDRTYKTLASASEKTCSFESTRKTVLKFQELSPWTTFGHVASNGAILEALEGEPKLHIVDISNTYCTQWPTLFEALATRNDDTPHLRLTSVVTAGATAQKVMKEIGARMEKFARLMGVPFKFNVVHHVGQLSDLDFSVLDIKEDEALAINCVNTLHSIAAVGNHRDAVISSLRRLKPRIVTVVEEEADLDIGLEGFEFVKGFEECLRWFRVYFEALDESFPRTSNERLMLERAAGRAVVDLVACSPADSVERREKAARWARRMHGGGGFNTVAFSEEVCDDVRALLRRYREGWAMTQCSDAGIFLTWKEQPVVWASAWRALT*