Glyma11g04960 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma11g04960

Feature Type:	gene_model
Chromosome:	Gm11
Start:	3455517
stop:	3457955
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g04960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49800	AT	Annotation by Michelle Graham. TAIR10: BSD domain-containing protein \| chr3:18471957-18473676 REVERSE LENGTH=428	SoyBase	E_val: 4.00E-105	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03909	PFAM	BSD domain	JGI		ISS
UniRef100_G7K2F5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BSD domain containing protein n=1 Tax=Medicago truncatula RepID=G7K2F5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LH45	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LH45_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g04960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g04960

Paralog	Evidence	Comments
Glyma01g40330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g04960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g046300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g04960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g04960

Limit To All Plant Sequences

>Glyma11g04960.1   sequence type=CDS   gene model=Glyma11g04960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTGGTTTACAAGGACAATCGCAAACTCACTCAAACTCGACGACGACGACAATGGCGGTGACCTAAAATCCCCTCCGAAGAAACCCGATTCGGAACCCGTTCAACCCGATTCCGCATCCACCCCCAATCCCACCACGCGCGGCGTCAAAGAGGATTTTTCCGAGCTCACCAAATCCTTTTCCCGCCAGCTCTGGGGAGTCGCCTCCTTCCTCGCCCCGCCGCCCGATCCCCAATCCGAAAAGCCCGTCGCCGATTCCAATCCCAATCCCACTGACGACGACGAAGAGGAAGATATCATCGCAGGAATCCGAAACGATTTCGCGGAGATTAGTGGCAAGTTCAAGAGCGGGATCTCCAAAATTTCTGGTAATAAGACGGTATCCGAATTCACTAAGATAGCTTCGAGTTTCCTTCAGCTTGGATCCGAGGAGGAATACGATCTCGAAGGTGTCCTCGGAGTTACCGAGGATGTGGTTGCCTTCGCCAGAAGCGTAGCTTTGCATCCAGAAACTTGGCTCGATTTTCCCCTTCCCGATGATGAGGATTCTGATGATTTTGATTTGTCCGATGCACAACAAGAACATGCTCTAGCTGTTGAACACCTGGCACCAAGCTTAGCTGCTCTTAGAATGGAGCTGTGCCCCGGATACATGAGTGATGGTAACTTTTGGAAGATATACTTTGTTCTCGTGCACCCTAGACTTAGCAAAACTGATGCTGCTATTTTATCCACTCCACAAATAATGGAAGCTAGAGCAATGTTAACTCTGGCTTTAGACAAAAGAAGTAAGGAAAAGAAAGAATCTGACTTATCTGCAGGAGGGAATGTTCCCTCAAAAGAGGAGGAACAGCATCTCTTTGTGCCAAGCACTGTTCAACTTGAATCAGCACCTCTCCAGACATCTGCTGCTGAAGCTGCCCCATCTGTGGTTGTTTCTAATGTTGAGATGGAGAAACATGCCACTCAAAGTATTGTTCCAGAGGTTATTGACAAGTCTGTGGTTAAAGAAGCAACGGTAAATCCATCTGCAGAACAATCATCATCTGGTTCAACCAATAGATTTTTGGATGAATCCTATGAGGATGATGCTGATGATTGGTTGAAAGAAGAGGATACTTCTGAAATGGTTGGTCCCAGTGGAACTCCTGTTCACACTGGTAATGACGAGGATGTATCATTCAGTGATCTTGAGGAGGATGATGGTGATGTACATGAAAGTTATAAAAAAACTAGATCAGGCTCTGATTCTTCAACAAAAGACTCTCGAGATTGGGTTCAGTTAGGTAGAAGTTCACCTAACTCTGATAAGGATTTAAACTGTGTAGAAGGCAAACATGTTGGCTCTGAGCATTCAAGTGCTCGTAATTCTATGACCAAGGATTCCAATGATTGGCTTAATGTTGATGACATTGATGTAATATGA

Predicted protein sequences of Glyma11g04960

Limit To All Plant Sequences

>Glyma11g04960.1   sequence type=predicted peptide   gene model=Glyma11g04960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWFTRTIANSLKLDDDDNGGDLKSPPKKPDSEPVQPDSASTPNPTTRGVKEDFSELTKSFSRQLWGVASFLAPPPDPQSEKPVADSNPNPTDDDEEEDIIAGIRNDFAEISGKFKSGISKISGNKTVSEFTKIASSFLQLGSEEEYDLEGVLGVTEDVVAFARSVALHPETWLDFPLPDDEDSDDFDLSDAQQEHALAVEHLAPSLAALRMELCPGYMSDGNFWKIYFVLVHPRLSKTDAAILSTPQIMEARAMLTLALDKRSKEKKESDLSAGGNVPSKEEEQHLFVPSTVQLESAPLQTSAAEAAPSVVVSNVEMEKHATQSIVPEVIDKSVVKEATVNPSAEQSSSGSTNRFLDESYEDDADDWLKEEDTSEMVGPSGTPVHTGNDEDVSFSDLEEDDGDVHESYKKTRSGSDSSTKDSRDWVQLGRSSPNSDKDLNCVEGKHVGSEHSSARNSMTKDSNDWLNVDDIDVI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain