Glyma11g04920 - SoyBase

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Report for Sequence Feature Glyma11g04920

Feature Type:	gene_model
Chromosome:	Gm11
Start:	3425276
stop:	3425788
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g04920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49760	AT	Annotation by Michelle Graham. TAIR10: basic leucine-zipper 5 \| chr3:18455569-18456039 REVERSE LENGTH=156	SoyBase	E_val: 5.00E-28	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR22952	Panther	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	JGI		ISS
PTHR22952:SF60	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00170	PFAM	bZIP transcription factor	JGI		ISS
UniRef100_G7K2E8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein ABSCISIC ACID-INSENSITIVE n=1 Tax=Medicago truncatula RepID=G7K2E8_MEDTR	SoyBase	E_val: 2.00E-61	ISS
UniRef100_I1LH41	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LH41_SOYBN	SoyBase	E_val: 7.00E-115	ISS

Expression Patterns of Glyma11g04920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g04920

Paralog	Evidence	Comments
Glyma01g40370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g04920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g045900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g04920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g04920

Limit To All Plant Sequences

>Glyma11g04920.2   sequence type=CDS   gene model=Glyma11g04920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTCTGCTCTTCCTTTTCAGGGAAACCCATTCCCGGCGTTGGACTACGCTTTCATGCCGTGGGATGGGCTTGACTCTTTGGGCTTCAAGCCCACCAGCCCCAATCCCGTCACTTCGAGTTCCGGCTCAGGCTACCCAAACCGAACCCATGCCGAAGAAAAACCGGCCTCGGACAAGTCGAACCACGTCACGTCCGTCATGGAGGAGCGGAAACGCAGGAGAATGATATCGAACCGGGAATCGGCCCGAAGGTCACGCATTCGTAAACAGAGACATCTTGAGAACTTACGGAACCAGATGAATCTATTTAGGGTTGAAAATCGAAAACTGAACAACGGGTTGCAGTTTCTCCTTCACCACTGTAACCGCCTGAGAACCGAAAACGAGTGGCTCCTGTCCGAACGACCCATGCTCCGTCAAAAACTAGCCAACATAAATCAAATTTTGCTTTTCCGACATTTGCAACCATTTTCCTCTGCATGGCCCTGCAATATTGTCTTGGCGGAATAA

Predicted protein sequences of Glyma11g04920

Limit To All Plant Sequences

>Glyma11g04920.2   sequence type=predicted peptide   gene model=Glyma11g04920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSALPFQGNPFPALDYAFMPWDGLDSLGFKPTSPNPVTSSSGSGYPNRTHAEEKPASDKSNHVTSVMEERKRRRMISNRESARRSRIRKQRHLENLRNQMNLFRVENRKLNNGLQFLLHHCNRLRTENEWLLSERPMLRQKLANINQILLFRHLQPFSSAWPCNIVLAE*

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